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-rw-r--r--custom_mutators/libfuzzer/FuzzerMerge.cpp485
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diff --git a/custom_mutators/libfuzzer/FuzzerMerge.cpp b/custom_mutators/libfuzzer/FuzzerMerge.cpp
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+//===- FuzzerMerge.cpp - merging corpora ----------------------------------===//
+//
+// Part of the LLVM Project, under the Apache License v2.0 with LLVM Exceptions.
+// See https://llvm.org/LICENSE.txt for license information.
+// SPDX-License-Identifier: Apache-2.0 WITH LLVM-exception
+//
+//===----------------------------------------------------------------------===//
+// Merging corpora.
+//===----------------------------------------------------------------------===//
+
+#include "FuzzerCommand.h"
+#include "FuzzerMerge.h"
+#include "FuzzerIO.h"
+#include "FuzzerInternal.h"
+#include "FuzzerTracePC.h"
+#include "FuzzerUtil.h"
+
+#include <fstream>
+#include <iterator>
+#include <set>
+#include <sstream>
+#include <unordered_set>
+
+namespace fuzzer {
+
+bool Merger::Parse(const std::string &Str, bool ParseCoverage) {
+
+  std::istringstream SS(Str);
+  return Parse(SS, ParseCoverage);
+
+}
+
+void Merger::ParseOrExit(std::istream &IS, bool ParseCoverage) {
+
+  if (!Parse(IS, ParseCoverage)) {
+
+    Printf("MERGE: failed to parse the control file (unexpected error)\n");
+    exit(1);
+
+  }
+
+}
+
+// The control file example:
+//
+// 3 # The number of inputs
+// 1 # The number of inputs in the first corpus, <= the previous number
+// file0
+// file1
+// file2  # One file name per line.
+// STARTED 0 123  # FileID, file size
+// FT 0 1 4 6 8  # FileID COV1 COV2 ...
+// COV 0 7 8 9 # FileID COV1 COV1
+// STARTED 1 456  # If FT is missing, the input crashed while processing.
+// STARTED 2 567
+// FT 2 8 9
+// COV 2 11 12
+bool Merger::Parse(std::istream &IS, bool ParseCoverage) {
+
+  LastFailure.clear();
+  std::string Line;
+
+  // Parse NumFiles.
+  if (!std::getline(IS, Line, '\n')) return false;
+  std::istringstream L1(Line);
+  size_t             NumFiles = 0;
+  L1 >> NumFiles;
+  if (NumFiles == 0 || NumFiles > 10000000) return false;
+
+  // Parse NumFilesInFirstCorpus.
+  if (!std::getline(IS, Line, '\n')) return false;
+  std::istringstream L2(Line);
+  NumFilesInFirstCorpus = NumFiles + 1;
+  L2 >> NumFilesInFirstCorpus;
+  if (NumFilesInFirstCorpus > NumFiles) return false;
+
+  // Parse file names.
+  Files.resize(NumFiles);
+  for (size_t i = 0; i < NumFiles; i++)
+    if (!std::getline(IS, Files[i].Name, '\n')) return false;
+
+  // Parse STARTED, FT, and COV lines.
+  size_t           ExpectedStartMarker = 0;
+  const size_t     kInvalidStartMarker = -1;
+  size_t           LastSeenStartMarker = kInvalidStartMarker;
+  Vector<uint32_t> TmpFeatures;
+  Set<uint32_t>    PCs;
+  while (std::getline(IS, Line, '\n')) {
+
+    std::istringstream ISS1(Line);
+    std::string        Marker;
+    size_t             N;
+    ISS1 >> Marker;
+    ISS1 >> N;
+    if (Marker == "STARTED") {
+
+      // STARTED FILE_ID FILE_SIZE
+      if (ExpectedStartMarker != N) return false;
+      ISS1 >> Files[ExpectedStartMarker].Size;
+      LastSeenStartMarker = ExpectedStartMarker;
+      assert(ExpectedStartMarker < Files.size());
+      ExpectedStartMarker++;
+
+    } else if (Marker == "FT") {
+
+      // FT FILE_ID COV1 COV2 COV3 ...
+      size_t CurrentFileIdx = N;
+      if (CurrentFileIdx != LastSeenStartMarker) return false;
+      LastSeenStartMarker = kInvalidStartMarker;
+      if (ParseCoverage) {
+
+        TmpFeatures.clear();  // use a vector from outer scope to avoid resizes.
+        while (ISS1 >> N)
+          TmpFeatures.push_back(N);
+        std::sort(TmpFeatures.begin(), TmpFeatures.end());
+        Files[CurrentFileIdx].Features = TmpFeatures;
+
+      }
+
+    } else if (Marker == "COV") {
+
+      size_t CurrentFileIdx = N;
+      if (ParseCoverage)
+        while (ISS1 >> N)
+          if (PCs.insert(N).second) Files[CurrentFileIdx].Cov.push_back(N);
+
+    } else {
+
+      return false;
+
+    }
+
+  }
+
+  if (LastSeenStartMarker != kInvalidStartMarker)
+    LastFailure = Files[LastSeenStartMarker].Name;
+
+  FirstNotProcessedFile = ExpectedStartMarker;
+  return true;
+
+}
+
+size_t Merger::ApproximateMemoryConsumption() const {
+
+  size_t Res = 0;
+  for (const auto &F : Files)
+    Res += sizeof(F) + F.Features.size() * sizeof(F.Features[0]);
+  return Res;
+
+}
+
+// Decides which files need to be merged (add those to NewFiles).
+// Returns the number of new features added.
+size_t Merger::Merge(const Set<uint32_t> &InitialFeatures,
+                     Set<uint32_t> *      NewFeatures,
+                     const Set<uint32_t> &InitialCov, Set<uint32_t> *NewCov,
+                     Vector<std::string> *NewFiles) {
+
+  NewFiles->clear();
+  assert(NumFilesInFirstCorpus <= Files.size());
+  Set<uint32_t> AllFeatures = InitialFeatures;
+
+  // What features are in the initial corpus?
+  for (size_t i = 0; i < NumFilesInFirstCorpus; i++) {
+
+    auto &Cur = Files[i].Features;
+    AllFeatures.insert(Cur.begin(), Cur.end());
+
+  }
+
+  // Remove all features that we already know from all other inputs.
+  for (size_t i = NumFilesInFirstCorpus; i < Files.size(); i++) {
+
+    auto &           Cur = Files[i].Features;
+    Vector<uint32_t> Tmp;
+    std::set_difference(Cur.begin(), Cur.end(), AllFeatures.begin(),
+                        AllFeatures.end(), std::inserter(Tmp, Tmp.begin()));
+    Cur.swap(Tmp);
+
+  }
+
+  // Sort. Give preference to
+  //   * smaller files
+  //   * files with more features.
+  std::sort(Files.begin() + NumFilesInFirstCorpus, Files.end(),
+            [&](const MergeFileInfo &a, const MergeFileInfo &b) -> bool {
+
+              if (a.Size != b.Size) return a.Size < b.Size;
+              return a.Features.size() > b.Features.size();
+
+            });
+
+  // One greedy pass: add the file's features to AllFeatures.
+  // If new features were added, add this file to NewFiles.
+  for (size_t i = NumFilesInFirstCorpus; i < Files.size(); i++) {
+
+    auto &Cur = Files[i].Features;
+    // Printf("%s -> sz %zd ft %zd\n", Files[i].Name.c_str(),
+    //       Files[i].Size, Cur.size());
+    bool FoundNewFeatures = false;
+    for (auto Fe : Cur) {
+
+      if (AllFeatures.insert(Fe).second) {
+
+        FoundNewFeatures = true;
+        NewFeatures->insert(Fe);
+
+      }
+
+    }
+
+    if (FoundNewFeatures) NewFiles->push_back(Files[i].Name);
+    for (auto Cov : Files[i].Cov)
+      if (InitialCov.find(Cov) == InitialCov.end()) NewCov->insert(Cov);
+
+  }
+
+  return NewFeatures->size();
+
+}
+
+Set<uint32_t> Merger::AllFeatures() const {
+
+  Set<uint32_t> S;
+  for (auto &File : Files)
+    S.insert(File.Features.begin(), File.Features.end());
+  return S;
+
+}
+
+// Inner process. May crash if the target crashes.
+void Fuzzer::CrashResistantMergeInternalStep(const std::string &CFPath) {
+
+  Printf("MERGE-INNER: using the control file '%s'\n", CFPath.c_str());
+  Merger        M;
+  std::ifstream IF(CFPath);
+  M.ParseOrExit(IF, false);
+  IF.close();
+  if (!M.LastFailure.empty())
+    Printf("MERGE-INNER: '%s' caused a failure at the previous merge step\n",
+           M.LastFailure.c_str());
+
+  Printf(
+      "MERGE-INNER: %zd total files;"
+      " %zd processed earlier; will process %zd files now\n",
+      M.Files.size(), M.FirstNotProcessedFile,
+      M.Files.size() - M.FirstNotProcessedFile);
+
+  std::ofstream OF(CFPath, std::ofstream::out | std::ofstream::app);
+  Set<size_t>   AllFeatures;
+  auto          PrintStatsWrapper = [this, &AllFeatures](const char *Where) {
+
+    this->PrintStats(Where, "\n", 0, AllFeatures.size());
+
+  };
+
+  Set<const TracePC::PCTableEntry *> AllPCs;
+  for (size_t i = M.FirstNotProcessedFile; i < M.Files.size(); i++) {
+
+    Fuzzer::MaybeExitGracefully();
+    auto U = FileToVector(M.Files[i].Name);
+    if (U.size() > MaxInputLen) {
+
+      U.resize(MaxInputLen);
+      U.shrink_to_fit();
+
+    }
+
+    // Write the pre-run marker.
+    OF << "STARTED " << i << " " << U.size() << "\n";
+    OF.flush();  // Flush is important since Command::Execute may crash.
+    // Run.
+    TPC.ResetMaps();
+    ExecuteCallback(U.data(), U.size());
+    // Collect coverage. We are iterating over the files in this order:
+    // * First, files in the initial corpus ordered by size, smallest first.
+    // * Then, all other files, smallest first.
+    // So it makes no sense to record all features for all files, instead we
+    // only record features that were not seen before.
+    Set<size_t> UniqFeatures;
+    TPC.CollectFeatures([&](size_t Feature) {
+
+      if (AllFeatures.insert(Feature).second) UniqFeatures.insert(Feature);
+
+    });
+
+    TPC.UpdateObservedPCs();
+    // Show stats.
+    if (!(TotalNumberOfRuns & (TotalNumberOfRuns - 1)))
+      PrintStatsWrapper("pulse ");
+    if (TotalNumberOfRuns == M.NumFilesInFirstCorpus)
+      PrintStatsWrapper("LOADED");
+    // Write the post-run marker and the coverage.
+    OF << "FT " << i;
+    for (size_t F : UniqFeatures)
+      OF << " " << F;
+    OF << "\n";
+    OF << "COV " << i;
+    TPC.ForEachObservedPC([&](const TracePC::PCTableEntry *TE) {
+
+      if (AllPCs.insert(TE).second) OF << " " << TPC.PCTableEntryIdx(TE);
+
+    });
+
+    OF << "\n";
+    OF.flush();
+
+  }
+
+  PrintStatsWrapper("DONE  ");
+
+}
+
+static size_t WriteNewControlFile(const std::string &          CFPath,
+                                  const Vector<SizedFile> &    OldCorpus,
+                                  const Vector<SizedFile> &    NewCorpus,
+                                  const Vector<MergeFileInfo> &KnownFiles) {
+
+  std::unordered_set<std::string> FilesToSkip;
+  for (auto &SF : KnownFiles)
+    FilesToSkip.insert(SF.Name);
+
+  Vector<std::string> FilesToUse;
+  auto                MaybeUseFile = [=, &FilesToUse](std::string Name) {
+
+    if (FilesToSkip.find(Name) == FilesToSkip.end()) FilesToUse.push_back(Name);
+
+  };
+
+  for (auto &SF : OldCorpus)
+    MaybeUseFile(SF.File);
+  auto FilesToUseFromOldCorpus = FilesToUse.size();
+  for (auto &SF : NewCorpus)
+    MaybeUseFile(SF.File);
+
+  RemoveFile(CFPath);
+  std::ofstream ControlFile(CFPath);
+  ControlFile << FilesToUse.size() << "\n";
+  ControlFile << FilesToUseFromOldCorpus << "\n";
+  for (auto &FN : FilesToUse)
+    ControlFile << FN << "\n";
+
+  if (!ControlFile) {
+
+    Printf("MERGE-OUTER: failed to write to the control file: %s\n",
+           CFPath.c_str());
+    exit(1);
+
+  }
+
+  return FilesToUse.size();
+
+}
+
+// Outer process. Does not call the target code and thus should not fail.
+void CrashResistantMerge(const Vector<std::string> &Args,
+                         const Vector<SizedFile> &  OldCorpus,
+                         const Vector<SizedFile> &  NewCorpus,
+                         Vector<std::string> *      NewFiles,
+                         const Set<uint32_t> &      InitialFeatures,
+                         Set<uint32_t> *            NewFeatures,
+                         const Set<uint32_t> &InitialCov, Set<uint32_t> *NewCov,
+                         const std::string &CFPath, bool V /*Verbose*/) {
+
+  if (NewCorpus.empty() && OldCorpus.empty()) return;  // Nothing to merge.
+  size_t                NumAttempts = 0;
+  Vector<MergeFileInfo> KnownFiles;
+  if (FileSize(CFPath)) {
+
+    VPrintf(V, "MERGE-OUTER: non-empty control file provided: '%s'\n",
+            CFPath.c_str());
+    Merger        M;
+    std::ifstream IF(CFPath);
+    if (M.Parse(IF, /*ParseCoverage=*/true)) {
+
+      VPrintf(V,
+              "MERGE-OUTER: control file ok, %zd files total,"
+              " first not processed file %zd\n",
+              M.Files.size(), M.FirstNotProcessedFile);
+      if (!M.LastFailure.empty())
+        VPrintf(V,
+                "MERGE-OUTER: '%s' will be skipped as unlucky "
+                "(merge has stumbled on it the last time)\n",
+                M.LastFailure.c_str());
+      if (M.FirstNotProcessedFile >= M.Files.size()) {
+
+        // Merge has already been completed with the given merge control file.
+        if (M.Files.size() == OldCorpus.size() + NewCorpus.size()) {
+
+          VPrintf(
+              V,
+              "MERGE-OUTER: nothing to do, merge has been completed before\n");
+          exit(0);
+
+        }
+
+        // Number of input files likely changed, start merge from scratch, but
+        // reuse coverage information from the given merge control file.
+        VPrintf(
+            V,
+            "MERGE-OUTER: starting merge from scratch, but reusing coverage "
+            "information from the given control file\n");
+        KnownFiles = M.Files;
+
+      } else {
+
+        // There is a merge in progress, continue.
+        NumAttempts = M.Files.size() - M.FirstNotProcessedFile;
+
+      }
+
+    } else {
+
+      VPrintf(V, "MERGE-OUTER: bad control file, will overwrite it\n");
+
+    }
+
+  }
+
+  if (!NumAttempts) {
+
+    // The supplied control file is empty or bad, create a fresh one.
+    VPrintf(V,
+            "MERGE-OUTER: "
+            "%zd files, %zd in the initial corpus, %zd processed earlier\n",
+            OldCorpus.size() + NewCorpus.size(), OldCorpus.size(),
+            KnownFiles.size());
+    NumAttempts = WriteNewControlFile(CFPath, OldCorpus, NewCorpus, KnownFiles);
+
+  }
+
+  // Execute the inner process until it passes.
+  // Every inner process should execute at least one input.
+  Command BaseCmd(Args);
+  BaseCmd.removeFlag("merge");
+  BaseCmd.removeFlag("fork");
+  BaseCmd.removeFlag("collect_data_flow");
+  for (size_t Attempt = 1; Attempt <= NumAttempts; Attempt++) {
+
+    Fuzzer::MaybeExitGracefully();
+    VPrintf(V, "MERGE-OUTER: attempt %zd\n", Attempt);
+    Command Cmd(BaseCmd);
+    Cmd.addFlag("merge_control_file", CFPath);
+    Cmd.addFlag("merge_inner", "1");
+    if (!V) {
+
+      Cmd.setOutputFile(getDevNull());
+      Cmd.combineOutAndErr();
+
+    }
+
+    auto ExitCode = ExecuteCommand(Cmd);
+    if (!ExitCode) {
+
+      VPrintf(V, "MERGE-OUTER: succesfull in %zd attempt(s)\n", Attempt);
+      break;
+
+    }
+
+  }
+
+  // Read the control file and do the merge.
+  Merger        M;
+  std::ifstream IF(CFPath);
+  IF.seekg(0, IF.end);
+  VPrintf(V, "MERGE-OUTER: the control file has %zd bytes\n",
+          (size_t)IF.tellg());
+  IF.seekg(0, IF.beg);
+  M.ParseOrExit(IF, true);
+  IF.close();
+  VPrintf(V,
+          "MERGE-OUTER: consumed %zdMb (%zdMb rss) to parse the control file\n",
+          M.ApproximateMemoryConsumption() >> 20, GetPeakRSSMb());
+
+  M.Files.insert(M.Files.end(), KnownFiles.begin(), KnownFiles.end());
+  M.Merge(InitialFeatures, NewFeatures, InitialCov, NewCov, NewFiles);
+  VPrintf(V,
+          "MERGE-OUTER: %zd new files with %zd new features added; "
+          "%zd new coverage edges\n",
+          NewFiles->size(), NewFeatures->size(), NewCov->size());
+
+}
+
+}  // namespace fuzzer
+