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authorzimoun <zimon.toutoune@gmail.com>2021-03-15 14:01:34 +0100
committerRicardo Wurmus <rekado@elephly.net>2021-03-15 14:06:16 +0100
commit082f3c54337aaba40b978dfa9963f8ed6f20123d (patch)
treec9b18af7d3bef7d72125d3378b52bd4511201045
parent35b62c044e45a3add35b62839b07030f704bf708 (diff)
downloadguix-082f3c54337aaba40b978dfa9963f8ed6f20123d.tar.gz
gnu: r-edger: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-edger): Move from here...
* gnu/packages/bioconductor.scm (r-edger): ...to here.
-rw-r--r--gnu/packages/bioconductor.scm28
-rw-r--r--gnu/packages/bioinformatics.scm28
2 files changed, 28 insertions, 28 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b4456d13c8..fb0127b7ca 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1684,6 +1684,34 @@ testing.  The package also provides functions for the visualization and
 exploration of the results.")
     (license license:gpl3+)))
 
+(define-public r-edger
+  (package
+    (name "r-edger")
+    (version "3.32.1")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "edgeR" version))
+              (sha256
+               (base32
+                "1gaic8qf6a6sy0bmydh1xzf52w0wnq31aanpvw3a30pfsi218bcp"))))
+    (properties `((upstream-name . "edgeR")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-limma" ,r-limma)
+       ("r-locfit" ,r-locfit)
+       ("r-rcpp" ,r-rcpp)
+       ("r-statmod" ,r-statmod))) ;for estimateDisp
+    (home-page "http://bioinf.wehi.edu.au/edgeR")
+    (synopsis "EdgeR does empirical analysis of digital gene expression data")
+    (description "This package can do differential expression analysis of
+RNA-seq expression profiles with biological replication.  It implements a range
+of statistical methodology based on the negative binomial distributions,
+including empirical Bayes estimation, exact tests, generalized linear models
+and quasi-likelihood tests.  It be applied to differential signal analysis of
+other types of genomic data that produce counts, including ChIP-seq, SAGE and
+CAGE.")
+    (license license:gpl2+)))
+
 (define-public r-genefilter
   (package
     (name "r-genefilter")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ff6996011e..dc0d7a2906 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7691,34 +7691,6 @@ including VCF header and contents in RDF and JSON.")
     (home-page "https://github.com/vcflib/bio-vcf")
     (license license:expat)))
 
-(define-public r-edger
-  (package
-    (name "r-edger")
-    (version "3.32.1")
-    (source (origin
-              (method url-fetch)
-              (uri (bioconductor-uri "edgeR" version))
-              (sha256
-               (base32
-                "1gaic8qf6a6sy0bmydh1xzf52w0wnq31aanpvw3a30pfsi218bcp"))))
-    (properties `((upstream-name . "edgeR")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-limma" ,r-limma)
-       ("r-locfit" ,r-locfit)
-       ("r-rcpp" ,r-rcpp)
-       ("r-statmod" ,r-statmod))) ;for estimateDisp
-    (home-page "http://bioinf.wehi.edu.au/edgeR")
-    (synopsis "EdgeR does empirical analysis of digital gene expression data")
-    (description "This package can do differential expression analysis of
-RNA-seq expression profiles with biological replication.  It implements a range
-of statistical methodology based on the negative binomial distributions,
-including empirical Bayes estimation, exact tests, generalized linear models
-and quasi-likelihood tests.  It be applied to differential signal analysis of
-other types of genomic data that produce counts, including ChIP-seq, SAGE and
-CAGE.")
-    (license license:gpl2+)))
-
 (define-public r-variantannotation
   (package
     (name "r-variantannotation")