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| author | Ricardo Wurmus <rekado@elephly.net> | 2024-05-02 21:39:30 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-05-05 22:38:17 +0200 |
| commit | 8d14b1cbb60aaae926daa82849b892f9666e8b4f (patch) | |
| tree | 4e802d21d53d1b6a2a5b25aee4109acd993d6634 | |
| parent | 36a1e76173b025376ee880280d84bdb20febf52d (diff) | |
| download | guix-8d14b1cbb60aaae926daa82849b892f9666e8b4f.tar.gz | |
gnu: snakemake-5: Make compatible with tabulate 0.9.0.
* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Add phase 'tabulate-compatibility. Change-Id: I0b0ddafe9c2da91dbe10a584eb6fa0a3d5d62e87
| -rw-r--r-- | gnu/packages/python-xyz.scm | 5 |
1 files changed, 5 insertions, 0 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 788148f32b..b3c6d9821e 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -13222,6 +13222,11 @@ approach.") "--ignore=tests/test_google_lifesciences.py") #:phases #~(modify-phases %standard-phases + (add-after 'unpack 'tabulate-compatibility + (lambda _ + (substitute* "snakemake/dag.py" + (("\"job\": rule,") + "\"job\": rule.name,")))) ;; For cluster execution Snakemake will call Python. Since there is ;; no suitable PYTHONPATH set, cluster execution will fail. We fix ;; this by calling the snakemake wrapper instead. |