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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-01-28 22:24:17 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-01-28 22:24:51 +0100 |
| commit | c4a2cbeb06f2a4d56f98e682c2897a3167530f58 (patch) | |
| tree | ee8e54db56d47699104734341263bfa1aedd7978 | |
| parent | d889c96be4e0794a33d215d24eabe7e65c1d75b9 (diff) | |
| download | guix-c4a2cbeb06f2a4d56f98e682c2897a3167530f58.tar.gz | |
gnu: Add r-demultiplex.
* gnu/packages/bioinformatics.scm (r-demultiplex): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 41 |
1 files changed, 40 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f536ae6004..161767c671 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft <donttrustben@gmail.com> ;;; Copyright © 2015, 2016, 2018, 2019, 2020 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> @@ -7269,6 +7269,45 @@ between two different types of motif instances using as much relevant information as possible.") (license (list license:gpl2+ license:gpl3+)))) +(define-public r-demultiplex + (let ((commit "6e2a1422c8e6f418cfb271997eebc91f9195f299") + (revision "1")) + (package + (name "r-demultiplex") + (version (git-version "1.0.2" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/chris-mcginnis-ucsf/MULTI-seq") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "01kv88wp8vdaq07sjk0d3d1cb553mq1xqg0war81pgmg63bgi38w")))) + (properties `((upstream-name . "deMULTIplex"))) + (build-system r-build-system) + (propagated-inputs + `(("r-kernsmooth" ,r-kernsmooth) + ("r-reshape2" ,r-reshape2) + ("r-rtsne" ,r-rtsne) + ("r-shortread" ,r-shortread) + ("r-stringdist" ,r-stringdist))) + (home-page "https://github.com/chris-mcginnis-ucsf/MULTI-seq") + (synopsis "MULTI-seq pre-processing and classification tools") + (description + "deMULTIplex is an R package for analyzing single-cell RNA sequencing +data generated with the MULTI-seq sample multiplexing method. The package +includes software to + +@enumerate +@item Convert raw MULTI-seq sample barcode library FASTQs into a sample + barcode UMI count matrix, and +@item Classify cell barcodes into sample barcode groups. +@end enumerate +") + (license license:cc0)))) + (define-public r-genefilter (package (name "r-genefilter") |