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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2018-08-14 11:10:52 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-08-14 11:29:17 +0200 |
| commit | 242519ce7025bf09c3ba541faac6060eda52921d (patch) | |
| tree | 48de1c2c6b31fd3ee336a17a2c773faba5bcce82 | |
| parent | 4646d18eb769691224d25ead7da416b5f8783529 (diff) | |
| download | guix-242519ce7025bf09c3ba541faac6060eda52921d.tar.gz | |
gnu: Add r-circus.
* gnu/packages/bioinformatics.scm (r-circus): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index fe75744a28..5184a2916a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13275,6 +13275,48 @@ cases include: @end enumerate\n") (license license:expat))) +(define-public r-circus + (package + (name "r-circus") + (version "0.1.5") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/BIMSBbioinfo/ciRcus.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0jhjn3ilb057hbf6yzrihj13ifxxs32y7nkby8l3lkm28dg4p97h")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-annotationhub" ,r-annotationhub) + ("r-biomart" ,r-biomart) + ("r-data-table" ,r-data-table) + ("r-dbi" ,r-dbi) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-hash" ,r-hash) + ("r-iranges" ,r-iranges) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rmysql" ,r-rmysql) + ("r-s4vectors" ,r-s4vectors) + ("r-stringr" ,r-stringr) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/BIMSBbioinfo/ciRcus") + (synopsis "Annotation, analysis and visualization of circRNA data") + (description "Circus is an R package for annotation, analysis and +visualization of circRNA data. Users can annotate their circRNA candidates +with host genes, gene featrues they are spliced from, and discriminate between +known and yet unknown splice junctions. Circular-to-linear ratios of circRNAs +can be calculated, and a number of descriptive plots easily generated.") + (license license:artistic2.0))) + (define-public r-loomr (let ((commit "df0144bd2bbceca6fadef9edc1bbc5ca672d4739") (revision "1")) |