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| author | Ben Woodcroft <donttrustben@gmail.com> | 2015-06-24 11:51:05 +1000 |
|---|---|---|
| committer | Mark H Weaver <mhw@netris.org> | 2015-06-24 00:39:22 -0400 |
| commit | c684629f7c0cd9246ac395514e5b14ea118529cd (patch) | |
| tree | 73f932f6a9edafdef854e381f49bf82e7659e901 | |
| parent | 5a72e4665aa3348957da93bd0b2ad839bfc4c328 (diff) | |
| download | guix-c684629f7c0cd9246ac395514e5b14ea118529cd.tar.gz | |
gnu: Add hmmer.
* gnu/packages/bioinformatics.scm (hmmer): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e1303364a3..31df2196dc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1032,6 +1032,35 @@ several alignment strategies enable effective alignment of RNA-seq reads, in particular, reads spanning multiple exons.") (license license:gpl3+))) +(define-public hmmer + (package + (name "hmmer") + (version "3.1b2") + (source (origin + (method url-fetch) + (uri (string-append + "http://selab.janelia.org/software/hmmer" + (version-prefix version 1) "/" + version "/hmmer-" version ".tar.gz")) + (sha256 + (base32 + "0djmgc0pfli0jilfx8hql1axhwhqxqb8rxg2r5rg07aw73sfs5nx")))) + (build-system gnu-build-system) + (native-inputs `(("perl", perl))) + (home-page "http://hmmer.janelia.org") + (synopsis "Biosequence analysis using profile hidden Markov models") + (description + "HMMER is used for searching sequence databases for homologs of protein +sequences, and for making protein sequence alignments. It implements methods +using probabilistic models called profile hidden Markov models (profile +HMMs).") + (license (list license:gpl3+ + ;; The bundled library 'easel' is distributed + ;; under The Janelia Farm Software License. + (license:non-copyleft + "file://easel/LICENSE" + "See easel/LICENSE in the distribution."))))) + (define-public htseq (package (name "htseq") |