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author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-06-23 13:54:42 +0200 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2022-10-27 16:40:18 +0200 |
commit | 599655dc496491c2569689811d667df6ffeb396c (patch) | |
tree | 4c67912bf0ae2bd66890ee8098170c5520f8676e | |
parent | 3f755098cb6d92d5bbe9e4f780ec1d5a5c74e9b5 (diff) | |
download | guix-599655dc496491c2569689811d667df6ffeb396c.tar.gz |
gnu: Add r-attract.
* gnu/packages/bioconductor.scm (r-attract): New variable.
-rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e7354aa4e3..ad20602ff6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2317,6 +2317,37 @@ reproducible gene expression signatures capable of accurately distinguishing tumor samples from healthy controls.") (license license:artistic2.0))) +(define-public r-attract + (package + (name "r-attract") + (version "1.48.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "attract" version)) + (sha256 + (base32 + "0f1fsv278kpnxvqg9qa5rw2k3zr8zws0ab73ldl60h6pv9cy8x82")))) + (properties `((upstream-name . "attract"))) + (build-system r-build-system) + (propagated-inputs + (list r-annotationdbi + r-biobase + r-cluster + r-gostats + r-keggrest + r-limma + r-org-hs-eg-db + r-reactome-db)) + (home-page "https://bioconductor.org/packages/attract") + (synopsis "Finding drivers of Kauffman's attractor landscape") + (description + "This package contains the functions to find the gene expression modules +that represent the drivers of Kauffman's attractor landscape. The modules are +the core attractor pathways that discriminate between different cell types of +groups of interest. Each pathway has a set of synexpression groups, which show +transcriptionally-coordinated changes in gene expression.") + (license license:lgpl2.0+))) + (define-public r-awfisher (package (name "r-awfisher") |