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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-10-24 21:23:20 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-10-24 21:23:20 +0000 |
| commit | da526f33f2563508ffc0eff2e35c9c15be29f29e (patch) | |
| tree | f1235c1b76ad62fdce4d5a41f258dbdbde6d14e4 | |
| parent | 3eeae68af1f95448c8a4ebf98d7b49ccb86f273e (diff) | |
| download | guix-da526f33f2563508ffc0eff2e35c9c15be29f29e.tar.gz | |
gnu: cutadapt: Regenerate Cython files.
* gnu/packages/bioinformatics.scm (cutadapt)[arguments]: Add phase 'always-cythonize.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 10 |
1 files changed, 10 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ca21dcae2c..fc8b936d2a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2616,6 +2616,16 @@ annotations of the genome.") (base32 "1vqmsfkm6llxzmsz9wcfcvzx9a9f8iabvwik2rbyn7nc4wm25z89")))) (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'always-cythonize + (lambda _ + (delete-file "src/cutadapt/_align.c") + ;; If PKG-INFO exists, setup.py decides not to run Cython. + (substitute* "setup.py" + (("os.path.exists\\('PKG-INFO'\\):") + "os.path.exists('totally-does-not-exist'):"))))))) (inputs `(("python-dnaio" ,python-dnaio) ("python-xopen" ,python-xopen))) |