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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-12-18 15:25:31 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-12-18 15:29:08 +0100 |
| commit | 4a18112dfb738c325f9ef0145e9480df642ec9b8 (patch) | |
| tree | d2befb13ab15d0263bc17b0d54f04c905d6ae359 | |
| parent | 4d12c1e335e3949c451b045a1f128200432fdde9 (diff) | |
| download | guix-4a18112dfb738c325f9ef0145e9480df642ec9b8.tar.gz | |
gnu: Add r-biocpkgtools.
* gnu/packages/bioconductor.scm (r-biocpkgtools): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 62ec80397c..c5ad29297c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7274,3 +7274,47 @@ similarities can be calculated for pathways or gene sets, genes, or clusters and combined with other similarities. They can be used to improve networks, gene selection, testing relationships, and so on.") (license license:expat))) + +(define-public r-biocpkgtools + (package + (name "r-biocpkgtools") + (version "1.4.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BiocPkgTools" version)) + (sha256 + (base32 + "0gyhb3071pxmvaxla7cxy9k97s3z3ynl62jnqz9jnkd53c7jnd53")))) + (properties `((upstream-name . "BiocPkgTools"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocmanager" ,r-biocmanager) + ("r-biocviews" ,r-biocviews) + ("r-dplyr" ,r-dplyr) + ("r-dt" ,r-dt) + ("r-gh" ,r-gh) + ("r-graph" ,r-graph) + ("r-htmltools" ,r-htmltools) + ("r-htmlwidgets" ,r-htmlwidgets) + ("r-httr" ,r-httr) + ("r-igraph" ,r-igraph) + ("r-jsonlite" ,r-jsonlite) + ("r-magrittr" ,r-magrittr) + ("r-rbgl" ,r-rbgl) + ("r-readr" ,r-readr) + ("r-rex" ,r-rex) + ("r-rvest" ,r-rvest) + ("r-stringr" ,r-stringr) + ("r-tibble" ,r-tibble) + ("r-tidyr" ,r-tidyr) + ("r-xml2" ,r-xml2))) + (home-page "https://github.com/seandavi/BiocPkgTools") + (synopsis "Collection of tools for learning about Bioconductor packages") + (description + "Bioconductor has a rich ecosystem of metadata around packages, usage, +and build status. This package is a simple collection of functions to access +that metadata from R. The goal is to expose metadata for data mining and +value-added functionality such as package searching, text mining, and +analytics on packages.") + (license license:expat))) |