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| author | Arun Isaac <arunisaac@systemreboot.net> | 2022-04-26 18:16:32 +0530 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2022-05-09 11:14:18 +0300 |
| commit | a99054795240cb7c17754816127a86d764fe76db (patch) | |
| tree | 063f72ce45f6e59d02dacfd33ecd218ce2f45291 | |
| parent | ff1fd3b0120317adae839ca28658eddc480f130c (diff) | |
| download | guix-a99054795240cb7c17754816127a86d764fe76db.tar.gz | |
gnu: tabixpp: Use #:make-flags.
* gnu/packages/bioinformatics.scm (tabixpp)[arguments]: Do not override the build phase. Move the required make arguments to #:make-flags. Add build-libraries phase. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 16 |
1 files changed, 8 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ed4836998b..35e575d17c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14298,18 +14298,18 @@ mutations from scRNA-Seq data.") (inputs (list htslib zlib)) (arguments - (list #:tests? #f ; There are no tests to run. + (list #:make-flags #~(list "HTS_HEADERS=" + (string-append "HTS_LIB=" + (search-input-file %build-inputs + "/lib/libhts.a")) + "INCLUDES=") + #:tests? #f ; There are no tests to run. #:phases #~(modify-phases %standard-phases (delete 'configure) ; There is no configure phase. - ;; The build phase needs overriding the location of htslib. - (replace 'build + ;; Build shared and static libraries. + (add-after 'build 'build-libraries (lambda* (#:key inputs #:allow-other-keys) - (invoke "make" - (string-append "HTS_LIB=" (search-input-file inputs "/lib/libhts.a")) - (string-append "INCLUDES= -I" (search-input-directory inputs "/include/htslib")) - "HTS_HEADERS=" ; No need to check for headers here. - (string-append "LIBPATH=-L. -L" (search-input-directory inputs "/include"))) (invoke "g++" "-shared" "-o" "libtabixpp.so" "tabix.o" "-lhts") (invoke "ar" "rcs" "libtabixpp.a" "tabix.o"))) (replace 'install |