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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2023-10-31 11:57:19 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-10-31 13:58:08 +0100 |
| commit | d24c1078d2274e2b8b1094c64e6f90081f20faf0 (patch) | |
| tree | 06963387d2fb5a149d469b8cdb50d14f3f06cdbc | |
| parent | c0895371c5759c7d9edb330774e90f192cc4cf2c (diff) | |
| download | guix-d24c1078d2274e2b8b1094c64e6f90081f20faf0.tar.gz | |
gnu: Add r-r3cseq.
* gnu/packages/bioconductor.scm (r-r3cseq): New variable. Change-Id: Ib62db1415ef3988ccef88ad600192246964b4d84
| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3957a8f76f..45ab55a876 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7747,6 +7747,38 @@ matrix to solve the memory problem.") the Human Protein Atlas project.") (license license:artistic2.0))) +(define-public r-r3cseq + (package + (name "r-r3cseq") + (version "1.46.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "r3Cseq" version)) + (sha256 + (base32 "1wpjsiy9qh45h3k5s79w4zhkma5h4gvyf2sa8l934mx0jl16k0q2")))) + (properties `((upstream-name . "r3Cseq"))) + (build-system r-build-system) + (propagated-inputs + (list r-biostrings + r-data-table + r-genomeinfodb + r-genomicranges + r-iranges + r-qvalue + r-rcolorbrewer + r-rsamtools + r-rtracklayer + r-sqldf + r-vgam)) + (home-page "http://r3cseq.genereg.net/Site/index.html") + (synopsis + "Analysis of Chromosome conformation capture and Next-generation sequencing") + (description + "This package is used for the analysis of long-range chromatin +interactions from 3C-seq assay.") + (license license:gpl3))) + (define-public r-raggedexperiment (package (name "r-raggedexperiment") |