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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-06-01 15:06:04 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-06-02 14:30:14 +0200 |
| commit | e7c097306dea32cece9b2001ffc9918e1076677f (patch) | |
| tree | c2351fc7e890d6ad53f5b4d9b72f88bccb5c3a7f | |
| parent | 132b4c8c235e599a28604facce7ecee01b4a446e (diff) | |
| download | guix-e7c097306dea32cece9b2001ffc9918e1076677f.tar.gz | |
gnu: Add HTSlib.
* gnu/packages/bioinformatics.scm (htslib): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f66ea26b2a..c7836f173e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -919,6 +919,41 @@ sequencing (HTS) data. There are also an number of useful utilities for manipulating HTS data.") (license license:expat))) +(define-public htslib + (package + (name "htslib") + (version "1.2.1") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/samtools/htslib/releases/download/" + version "/htslib-" version ".tar.bz2")) + (sha256 + (base32 + "1c32ssscbnjwfw3dra140fq7riarp2x990qxybh34nr1p5r17nxx")))) + (build-system gnu-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after + 'unpack 'patch-tests + (lambda _ + (substitute* "test/test.pl" + (("/bin/bash") (which "bash"))) + #t))))) + (inputs + `(("zlib" ,zlib))) + (native-inputs + `(("perl" ,perl))) + (home-page "http://www.htslib.org") + (synopsis "C library for reading/writing high-throughput sequencing data") + (description + "HTSlib is a C library for reading/writing high-throughput sequencing +data. It also provides the bgzip, htsfile, and tabix utilities.") + ;; Files under cram/ are released under the modified BSD license; + ;; the rest is released under the Expat license + (license (list license:expat license:bsd-3)))) + (define-public macs (package (name "macs") |