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authorRicardo Wurmus <rekado@elephly.net>2019-03-06 21:31:41 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-06 21:31:41 +0100
commit13dabd6947c61789c231de96be1fb7a8116db0cd (patch)
treeee08a3699c1966409cb93116d42b60190a9c2b1c
parent0c792ffbd1fe52533676a501bfc54c2a33a69351 (diff)
downloadguix-13dabd6947c61789c231de96be1fb7a8116db0cd.tar.gz
gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3):
...to here.
-rw-r--r--gnu/packages/bioconductor.scm32
-rw-r--r--gnu/packages/bioinformatics.scm32
2 files changed, 32 insertions, 32 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 44864c2c6d..1bb1871fd0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -129,6 +129,38 @@ melanogaster (Fly) as provided by UCSC (dm6) and stored in Biostrings
 objects.")
     (license license:artistic2.0)))
 
+(define-public r-bsgenome-dmelanogaster-ucsc-dm3
+  (package
+    (name "r-bsgenome-dmelanogaster-ucsc-dm3")
+    (version "1.4.0")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/annotation/" instead of "bioc/".
+              (uri (string-append "https://www.bioconductor.org/packages/"
+                                  "release/data/annotation/src/contrib/"
+                                  "BSgenome.Dmelanogaster.UCSC.dm3_"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8"))))
+    (properties
+     `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3")))
+    (build-system r-build-system)
+    ;; As this package provides little more than a very large data file it
+    ;; doesn't make sense to build substitutes.
+    (arguments `(#:substitutable? #f))
+    (propagated-inputs
+     `(("r-bsgenome" ,r-bsgenome)))
+    (home-page
+     "https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/")
+    (synopsis "Full genome sequences for Fly")
+    (description
+     "This package provides full genome sequences for Drosophila
+melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in
+Biostrings objects.")
+    (license license:artistic2.0)))
+
 (define-public r-bsgenome-dmelanogaster-ucsc-dm3-masked
   (package
     (name "r-bsgenome-dmelanogaster-ucsc-dm3-masked")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7243ee1729..d45dedb6c9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8140,38 +8140,6 @@ the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
 based on the knownGene track.")
     (license license:artistic2.0)))
 
-(define-public r-bsgenome-dmelanogaster-ucsc-dm3
-  (package
-    (name "r-bsgenome-dmelanogaster-ucsc-dm3")
-    (version "1.4.0")
-    (source (origin
-              (method url-fetch)
-              ;; We cannot use bioconductor-uri here because this tarball is
-              ;; located under "data/annotation/" instead of "bioc/".
-              (uri (string-append "https://www.bioconductor.org/packages/"
-                                  "release/data/annotation/src/contrib/"
-                                  "BSgenome.Dmelanogaster.UCSC.dm3_"
-                                  version ".tar.gz"))
-              (sha256
-               (base32
-                "19bm3lkhhkag3gnwp419211fh0cnr0x6fa0r1lr0ycwrikxdxsv8"))))
-    (properties
-     `((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3")))
-    (build-system r-build-system)
-    ;; As this package provides little more than a very large data file it
-    ;; doesn't make sense to build substitutes.
-    (arguments `(#:substitutable? #f))
-    (propagated-inputs
-     `(("r-bsgenome" ,r-bsgenome)))
-    (home-page
-     "https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3/")
-    (synopsis "Full genome sequences for Fly")
-    (description
-     "This package provides full genome sequences for Drosophila
-melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in
-Biostrings objects.")
-    (license license:artistic2.0)))
-
 (define-public r-motifrg
   (package
     (name "r-motifrg")