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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-06-20 00:33:46 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-11-24 14:53:09 +0100 |
| commit | 13e8930efb855f3332045f38b558fecab50ac7fa (patch) | |
| tree | a2456262f9e485e376492d6c5a4b3c0bb08cc94e | |
| parent | f43a41d1966638b0b75a46276c76642cb89e3023 (diff) | |
| download | guix-13e8930efb855f3332045f38b558fecab50ac7fa.tar.gz | |
gnu: Add r-arrayexpress.
* gnu/packages/bioconductor.scm (r-arrayexpress): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 19b17651b2..da7420d9f2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2472,6 +2472,31 @@ reproducible gene expression signatures capable of accurately distinguishing tumor samples from healthy controls.") (license license:artistic2.0))) +(define-public r-arrayexpress + (package + (name "r-arrayexpress") + (version "1.56.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ArrayExpress" version)) + (sha256 + (base32 + "0v2v7v0gim0bsg34ciplapz6mjih68yqhcgzdlhcyj2d6vrgiad5")))) + (properties `((upstream-name . "ArrayExpress"))) + (build-system r-build-system) + (propagated-inputs + (list r-biobase + r-limma + r-oligo + r-xml)) + (home-page "https://bioconductor.org/packages/ArrayExpress") + (synopsis "Building R objects from ArrayExpress datasets") + (description + "This package offers the possibility to access the ArrayExpress repository +at @dfn{EBI} (European Bioinformatics Institute) and build Bioconductor data +structures: @code{ExpressionSet}, @code{AffyBatch}, @code{NChannelSet}.") + (license license:artistic2.0))) + (define-public r-aseb (package (name "r-aseb") |