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| author | pimi <madalinionel.patrascu@mdc-berlin.de> | 2018-10-02 16:23:12 -0400 |
|---|---|---|
| committer | Leo Famulari <leo@famulari.name> | 2018-10-02 16:23:49 -0400 |
| commit | 0f1622220a39a620854b0a268793e262746d460a (patch) | |
| tree | e45d0b24bbebb3a1bbf8ee1f648ef4fb3ed65f58 | |
| parent | 1ddb2b5c1ca1e18924cbb969c974a0e8d8e54010 (diff) | |
| download | guix-0f1622220a39a620854b0a268793e262746d460a.tar.gz | |
gnu: Add r-absfiltergsea.
* gnu/packages/bioinformatics.scm (r-absfiltergsea): New variable.
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 172832d148..b657bf6771 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13938,3 +13938,30 @@ generated by nanopore sequencing devices for the purposes of quality control and downstream analysis. Poretools operates directly on the native FAST5, a variant of the Hierarchical Data Format (HDF5) standard.") (license license:expat)))) + +(define-public r-absfiltergsea + (package + (name "r-absfiltergsea") + (version "1.5.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "AbsFilterGSEA" version)) + (sha256 + (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w")))) + (properties `((upstream-name . "AbsFilterGSEA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-deseq" ,r-deseq) + ("r-limma" ,r-limma) + ("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo))) + (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/") + (synopsis "Improved false positive control of gene-permuting with absolute filtering") + (description + "This package provides a function that performs gene-permuting of a gene-set +enrichment analysis (GSEA) calculation with or without the absolute filtering. + Without filtering, users can perform (original) two-tailed or one-tailed +absolute GSEA.") + (license license:gpl2))) |