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author | Ricardo Wurmus <rekado@elephly.net> | 2019-12-13 18:40:58 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2019-12-13 22:41:38 +0100 |
commit | 72b67e0b36cd472c893f99f4a3ab9a491e41000b (patch) | |
tree | c4eb9a1ede703cf21031294c22d22ce39646a969 | |
parent | bd74d7e6fc0e4b0c282a3a202b3dbfb4858368d0 (diff) | |
download | guix-72b67e0b36cd472c893f99f4a3ab9a491e41000b.tar.gz |
gnu: Add r-activedriverwgs.
* gnu/packages/bioconductor.scm (r-activedriverwgs): New variable.
-rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e584a7bced..ca29fb5a3e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6059,3 +6059,37 @@ features (e.g. genes, microRNAs).") data. This modified test allows for testing differential expression in qPCR data.") (license license:gpl2+))) + +;; This is a CRAN package, but it depends on Bioconductor packages, so we put +;; it here. +(define-public r-activedriverwgs + (package + (name "r-activedriverwgs") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ActiveDriverWGS" version)) + (sha256 + (base32 + "08l9dj8d3cd74z1dqn8n4yqykwvqjxsfa067wnxyh7xnfvvnm5v1")))) + (properties + `((upstream-name . "ActiveDriverWGS"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biostrings" ,r-biostrings) + ("r-bsgenome" ,r-bsgenome) + ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-plyr" ,r-plyr) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://cran.r-project.org/web/packages/ActiveDriverWGS/") + (synopsis "Driver discovery tool for cancer whole genomes") + (description + "This package provides a method for finding an enrichment of cancer +simple somatic mutations (SNVs and Indels) in functional elements across the +human genome. ActiveDriverWGS detects coding and noncoding driver elements +using whole genome sequencing data.") + (license license:gpl3))) |