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| author | zimoun <zimon.toutoune@gmail.com> | 2020-09-11 20:08:43 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-09-11 21:59:03 +0200 |
| commit | 66a8e620705d98b6240670f7f5f9441462e8f621 (patch) | |
| tree | 57a3752e5c1934c0e4c6d3bf4c5c3193df71504e | |
| parent | 496a52dc410e287aa2bd03e962fdc110cfb2a1cc (diff) | |
| download | guix-66a8e620705d98b6240670f7f5f9441462e8f621.tar.gz | |
gnu: r-qtl2: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-qtl2): Move from here... * gnu/packages/cran.scm (r-qtl2): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 | ||||
| -rw-r--r-- | gnu/packages/cran.scm | 27 |
2 files changed, 27 insertions, 26 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ae728f09dc..4de52f3aaa 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8510,32 +8510,6 @@ Stephens (1990).") throughput genetic sequencing data sets using regression methods.") (license license:artistic2.0))) -(define-public r-qtl2 - (package - (name "r-qtl2") - (version "0.22-11") - (source (origin - (method url-fetch) - (uri (cran-uri "qtl2" version)) - (sha256 - (base32 "0dfdzjylqzc92dcszawc8cyinxccjm3p36v9vcq9ma818pqcanmr")))) - (build-system r-build-system) - (propagated-inputs - `(("r-data-table" ,r-data-table) - ("r-jsonlite" ,r-jsonlite) - ("r-rcpp" ,r-rcpp) - ("r-rcppeigen" ,r-rcppeigen) - ("r-rsqlite" ,r-rsqlite) - ("r-yaml" ,r-yaml))) - (home-page "https://kbroman.org/qtl2/") - (synopsis "Quantitative Trait Locus Mapping in Experimental Crosses") - (description - "This package provides a set of tools to perform @dfn{Quantitative Trait -Locus} (QTL) analysis in experimental crosses. It is a reimplementation of the -@code{R/qtl} package to better handle high-dimensional data and complex cross -designs. Broman et al. (2018) <doi:10.1534/genetics.118.301595>.") - (license license:gpl3))) - (define-public r-zlibbioc (package (name "r-zlibbioc") diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 980ad17594..57b68c26ed 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19,6 +19,7 @@ ;;; Copyright © 2019 Nicolò Balzarotti <anothersms@gmail.com> ;;; Copyright © 2019 Wiktor Żelazny <wzelazny@vurv.cz> ;;; Copyright © 2019 Arne Babenhauserheide <arne_bab@web.de> +;;; Copyright © 2019, 2020 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2020 Todor Kondić <tk.code@protonmail.com> ;;; Copyright © 2020 Danjela Lura <danielaluraa@gmail.com> ;;; Copyright © 2020 Naga Malleswari <nagamalli@riseup.net> @@ -24356,3 +24357,29 @@ Using a hidden Markov model, R/qtl estimates genetic maps, to identify genotyping errors, and to perform single-QTL and two-QTL, two-dimensional genome scans.") (license license:gpl3))) + +(define-public r-qtl2 + (package + (name "r-qtl2") + (version "0.22-11") + (source (origin + (method url-fetch) + (uri (cran-uri "qtl2" version)) + (sha256 + (base32 "0dfdzjylqzc92dcszawc8cyinxccjm3p36v9vcq9ma818pqcanmr")))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-jsonlite" ,r-jsonlite) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-rsqlite" ,r-rsqlite) + ("r-yaml" ,r-yaml))) + (home-page "https://kbroman.org/qtl2/") + (synopsis "Quantitative Trait Locus Mapping in Experimental Crosses") + (description + "This package provides a set of tools to perform @dfn{Quantitative Trait +Locus} (QTL) analysis in experimental crosses. It is a reimplementation of the +@code{R/qtl} package to better handle high-dimensional data and complex cross +designs. Broman et al. (2018) <doi:10.1534/genetics.118.301595>.") + (license license:gpl3))) |