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| author | Roel Janssen <roel@gnu.org> | 2020-11-18 16:47:44 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-12-09 12:12:21 +0100 |
| commit | 6e396c4bff6c79befdc3e255b7d21c6af1774c5e (patch) | |
| tree | 7a52cf97f733e2a3d310ce16b57b12721e50628d | |
| parent | c84762c446bb2c98aecc1d94009fcc3137d5fd04 (diff) | |
| download | guix-6e396c4bff6c79befdc3e255b7d21c6af1774c5e.tar.gz | |
gnu: Add r-greylistchip.
* gnu/packages/bioconductor.scm (r-greylistchip): New variable.
| -rw-r--r-- | gnu/packages/bioconductor.scm | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 56d8036899..d8db2ba83b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1657,6 +1657,33 @@ effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.") (license license:gpl2))) +(define-public r-greylistchip + (package + (name "r-greylistchip") + (version "1.22.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "GreyListChIP" version)) + (sha256 + (base32 + "1d1yvza1aw3vs3di6mrra5l52ig0p9bpzprrqvknjaz5i4yb8ma6")))) + (properties `((upstream-name . "GreyListChIP"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bsgenome" ,r-bsgenome) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicalignments" ,r-genomicalignments) + ("r-genomicranges" ,r-genomicranges) + ("r-mass" ,r-mass) + ("r-rsamtools" ,r-rsamtools) + ("r-rtracklayer" ,r-rtracklayer) + ("r-summarizedexperiment" ,r-summarizedexperiment))) + (home-page "https://bioconductor.org/packages/GreyListChIP") + (synopsis "Greylist artefact regions based on ChIP inputs") + (description "This package identifies regions of ChIP experiments with high +signal in the input, that lead to spurious peaks during peak calling.") + (license license:artistic2.0))) + (define-public r-diffbind (package (name "r-diffbind") |