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| author | Maxim Cournoyer <maxim.cournoyer@gmail.com> | 2019-02-12 10:32:03 -0500 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-02-12 17:16:05 +0100 |
| commit | 155194d97d5ee2499dff063e674e548b8177daea (patch) | |
| tree | 05b65be6116e893d2ef19f29bd5e152282cf25f2 /NEWS | |
| parent | b856a78c949543da2cb829b36cb96e74309e8d35 (diff) | |
| download | guix-155194d97d5ee2499dff063e674e548b8177daea.tar.gz | |
gnu: python-pybedtools: Update to 0.8.0 and fix build.
From 40db2b4eae5ca61a3134cdaf7b156ed1ae9f7415 Mon Sep 17 00:00:00 2001
From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Date: Sun, 10 Feb 2019 23:39:25 -0500
Subject: [PATCH] gnu: python-pybedtools: Update to 0.8.0 and fix build.
* gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.8.0.
[phases]{disable-broken-tests}: Do not disable "test_issue_157" and
"test_to_dataframe" tests. Disable the "test_getting_example_beds".
{remove-cython-generated-files}: Add phase.
{generate-cython-extensions}: Add phase.
{check}: Move from python2-pybedtools to here. Add a scripts
subdirectory of the build directory to the PATH, so that the tests can call
them. Invoke pytest rather than nosetests.
[modules]: Move from python2-pybedtools to here.
[propagated-inputs]: Depend on the current BEDTOOLS rather than version 1.26.
[native-inputs]: Replace python-nose by python-pytest and add python-psutil.
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