Merge branch 'master' into core-updates

1 files changed, 28 insertions, 12 deletions

diff --git a/gnu/local.mk b/gnu/local.mk
index 45a7f06032..651aafb97e 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -15,9 +15,10 @@
 # Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr>
 # Copyright © 2017, 2018 Clément Lassieur <clement@lassieur.org>
 # Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
-# Copyright © 2017 Gábor Boskovits <boskovits@gmail.com>
+# Copyright © 2017, 2018 Gábor Boskovits <boskovits@gmail.com>
 # Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net>
 # Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com>
+# Copyright © 2018 Stefan Stefanović <stefanx2ovic@gmail.com>
 #
 # This file is part of GNU Guix.
 #
@@ -403,6 +404,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/sssd.scm				\
   %D%/packages/stalonetray.scm			\
   %D%/packages/statistics.scm			\
+  %D%/packages/stb.scm				\
   %D%/packages/storage.scm			\
   %D%/packages/suckless.scm			\
   %D%/packages/swig.scm				\
@@ -530,6 +532,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/tests/databases.scm			\
   %D%/tests/desktop.scm				\
   %D%/tests/dict.scm				\
+  %D%/tests/monitoring.scm                      \
   %D%/tests/nfs.scm				\
   %D%/tests/install.scm				\
   %D%/tests/mail.scm				\
@@ -563,7 +566,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/aegis-test-fixup-1.patch            	\
   %D%/packages/patches/aegis-test-fixup-2.patch            	\
   %D%/packages/patches/agg-am_c_prototype.patch			\
-  %D%/packages/patches/alsa-lib-add-environment-variable.patch \
   %D%/packages/patches/amule-crypto-6.patch			\
   %D%/packages/patches/ansible-wrap-program-hack.patch		\
   %D%/packages/patches/antiword-CVE-2014-8123.patch			\
@@ -584,7 +586,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/bash-completion-directories.patch	\
   %D%/packages/patches/bazaar-CVE-2017-14176.patch		\
   %D%/packages/patches/beignet-correct-file-names.patch		\
-  %D%/packages/patches/bind-CVE-2018-5738.patch			\
   %D%/packages/patches/binutils-loongson-workaround.patch	\
   %D%/packages/patches/blast+-fix-makefile.patch		\
   %D%/packages/patches/boost-fix-icu-build.patch		\
@@ -648,7 +649,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/elfutils-tests-ptrace.patch		\
   %D%/packages/patches/elogind-glibc-2.27.patch			\
   %D%/packages/patches/einstein-build.patch			\
-  %D%/packages/patches/emacs-browse-at-remote-cgit-gnu.patch	\
   %D%/packages/patches/emacs-exec-path.patch			\
   %D%/packages/patches/emacs-fix-scheme-indent-function.patch	\
   %D%/packages/patches/emacs-json-reformat-fix-tests.patch	\
@@ -672,13 +672,10 @@ dist_patch_DATA =						\
   %D%/packages/patches/fcgi-2.4.0-poll.patch			\
   %D%/packages/patches/fifo-map-fix-flags-for-gcc.patch		\
   %D%/packages/patches/fifo-map-remove-catch.hpp.patch		\
-  %D%/packages/patches/file-CVE-2017-1000249.patch		\
   %D%/packages/patches/findutils-localstatedir.patch		\
   %D%/packages/patches/findutils-test-xargs.patch		\
   %D%/packages/patches/flann-cmake-3.11.patch			\
   %D%/packages/patches/flint-ldconfig.patch			\
-  %D%/packages/patches/fltk-shared-lib-defines.patch		\
-  %D%/packages/patches/fltk-xfont-on-demand.patch		\
   %D%/packages/patches/foomatic-filters-CVE-2015-8327.patch	\
   %D%/packages/patches/foomatic-filters-CVE-2015-8560.patch	\
   %D%/packages/patches/freeimage-CVE-2015-0852.patch		\
@@ -716,6 +713,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/geoclue-config.patch			\
   %D%/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch \
   %D%/packages/patches/ghc-dont-pass-linker-flags-via-response-files.patch	\
+  %D%/packages/patches/ghostscript-CVE-2018-10194.patch		\
   %D%/packages/patches/ghostscript-no-header-id.patch		\
   %D%/packages/patches/ghostscript-no-header-uuid.patch		\
   %D%/packages/patches/ghostscript-no-header-creationdate.patch \
@@ -800,11 +798,14 @@ dist_patch_DATA =						\
   %D%/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch	\
   %D%/packages/patches/icecat-use-system-graphite2.patch	\
   %D%/packages/patches/icecat-use-system-harfbuzz.patch		\
+  %D%/packages/patches/icedtea-6-hotspot-gcc-segfault-workaround.patch  \
+  %D%/packages/patches/icedtea-7-hotspot-gcc-segfault-workaround.patch  \
   %D%/packages/patches/id3lib-CVE-2007-4460.patch			\
   %D%/packages/patches/ilmbase-fix-tests.patch			\
   %D%/packages/patches/intltool-perl-compatibility.patch	\
   %D%/packages/patches/isl-0.11.1-aarch64-support.patch	\
   %D%/packages/patches/jacal-fix-texinfo.patch			\
+  %D%/packages/patches/jamvm-arm.patch				\
   %D%/packages/patches/java-apache-ivy-port-to-latest-bouncycastle.patch	\
   %D%/packages/patches/java-commons-collections-fix-java8.patch \
   %D%/packages/patches/java-jeromq-fix-tests.patch		\
@@ -857,7 +858,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/libevent-2.1-skip-failing-test.patch	\
   %D%/packages/patches/libexif-CVE-2016-6328.patch		\
   %D%/packages/patches/libexif-CVE-2017-7544.patch		\
-  %D%/packages/patches/libgit2-0.25.1-mtime-0.patch		\
+  %D%/packages/patches/libgit2-mtime-0.patch			\
   %D%/packages/patches/libgdata-fix-tests.patch			\
   %D%/packages/patches/libgdata-glib-duplicate-tests.patch	\
   %D%/packages/patches/libgnome-encoding.patch			\
@@ -931,13 +932,13 @@ dist_patch_DATA =						\
   %D%/packages/patches/mcrypt-CVE-2012-4426.patch			\
   %D%/packages/patches/mcrypt-CVE-2012-4527.patch			\
   %D%/packages/patches/mesa-skip-disk-cache-test.patch		\
-  %D%/packages/patches/mesa-wayland-egl-symbols-check-mips.patch	\
   %D%/packages/patches/meson-for-build-rpath.patch		\
   %D%/packages/patches/metabat-fix-compilation.patch		\
   %D%/packages/patches/mhash-keygen-test-segfault.patch		\
   %D%/packages/patches/mingw-w64-5.0rc2-gcc-4.9.3.patch		\
   %D%/packages/patches/mpc123-initialize-ao.patch		\
   %D%/packages/patches/module-init-tools-moduledir.patch	\
+  %D%/packages/patches/monero-use-system-miniupnpc.patch			\
   %D%/packages/patches/mongodb-support-unknown-linux-distributions.patch	\
   %D%/packages/patches/mozjs17-aarch64-support.patch		\
   %D%/packages/patches/mozjs24-aarch64-support.patch		\
@@ -975,12 +976,13 @@ dist_patch_DATA =						\
   %D%/packages/patches/ocaml-graph-honor-source-date-epoch.patch	\
   %D%/packages/patches/omake-fix-non-determinism.patch	\
   %D%/packages/patches/ola-readdir-r.patch			\
+  %D%/packages/patches/openbabel-fix-crash-on-nwchem-output.patch	\
   %D%/packages/patches/opencascade-oce-glibc-2.26.patch		\
+  %D%/packages/patches/openblas-fix-tests-i686.patch		\
   %D%/packages/patches/openexr-missing-samples.patch		\
   %D%/packages/patches/openfoam-4.1-cleanup.patch			\
   %D%/packages/patches/openldap-CVE-2017-9287.patch		\
   %D%/packages/patches/openocd-nrf52.patch			\
-  %D%/packages/patches/openscenegraph-ffmpeg3.patch             \
   %D%/packages/patches/opensmtpd-fix-crash.patch		\
   %D%/packages/patches/openssl-runpath.patch			\
   %D%/packages/patches/openssl-1.0.2-CVE-2018-0495.patch	\
@@ -1009,6 +1011,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/perl-net-amazon-s3-moose-warning.patch	\
   %D%/packages/patches/perl-net-dns-resolver-programmable-fix.patch	\
   %D%/packages/patches/perl-no-sys-dirs.patch			\
+  %D%/packages/patches/perl-text-markdown-discount-unbundle.patch	\
   %D%/packages/patches/perl-module-pluggable-search.patch	\
   %D%/packages/patches/perl-reproducible-build-date.patch	\
   %D%/packages/patches/perl-www-curl-remove-symbol.patch	\
@@ -1052,6 +1055,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-3-search-paths.patch		\
   %D%/packages/patches/python-3-fix-tests.patch			\
   %D%/packages/patches/python-axolotl-AES-fix.patch		\
+  %D%/packages/patches/python-cairocffi-dlopen-path.patch	\
   %D%/packages/patches/python-dendropy-fix-tests.patch		\
   %D%/packages/patches/python-fix-tests.patch			\
   %D%/packages/patches/python-genshi-add-support-for-python-3.4-AST.patch	\
@@ -1082,6 +1086,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/qemu-CVE-2018-11806.patch 		\
   %D%/packages/patches/qt4-ldflags.patch			\
   %D%/packages/patches/qtbase-use-TZDIR.patch			\
+  %D%/packages/patches/qtoctave-qt-5.11-fix.patch		\
   %D%/packages/patches/qtscript-disable-tests.patch		\
   %D%/packages/patches/quagga-reproducible-build.patch          \
   %D%/packages/patches/quassel-qt-5.11.patch			\
@@ -1100,18 +1105,20 @@ dist_patch_DATA =						\
   %D%/packages/patches/rpcbind-CVE-2017-8779.patch		\
   %D%/packages/patches/rsem-makefile.patch			\
   %D%/packages/patches/rtags-separate-rct.patch			\
+  %D%/packages/patches/racket-fix-xform-issue.patch		\
   %D%/packages/patches/ruby-rubygems-276-for-ruby24.patch	\
   %D%/packages/patches/ruby-concurrent-ignore-broken-test.patch	\
   %D%/packages/patches/ruby-concurrent-test-arm.patch		\
   %D%/packages/patches/ruby-rack-ignore-failing-test.patch      \
   %D%/packages/patches/ruby-tzinfo-data-ignore-broken-test.patch\
+  %D%/packages/patches/rust-bootstrap-stage0-test.patch		\
+  %D%/packages/patches/rust-coresimd-doctest.patch		\
   %D%/packages/patches/rxvt-unicode-escape-sequences.patch	\
   %D%/packages/patches/scheme48-tests.patch			\
   %D%/packages/patches/scotch-test-threading.patch		\
   %D%/packages/patches/scotch-build-parallelism.patch		\
   %D%/packages/patches/scotch-graph-diam-64.patch		\
   %D%/packages/patches/scotch-graph-induce-type-64.patch	\
-  %D%/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch  \
   %D%/packages/patches/sdl-libx11-1.6.patch			\
   %D%/packages/patches/seq24-rename-mutex.patch			\
   %D%/packages/patches/sharutils-CVE-2018-1000097.patch		\
@@ -1126,6 +1133,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/superlu-dist-scotchmetis.patch		\
   %D%/packages/patches/swish-e-search.patch			\
   %D%/packages/patches/swish-e-format-security.patch		\
+  %D%/packages/patches/syncthing-fix-crash.patch 		\
   %D%/packages/patches/synfigstudio-fix-ui-with-gtk3.patch 	\
   %D%/packages/patches/t1lib-CVE-2010-2642.patch		\
   %D%/packages/patches/t1lib-CVE-2011-0764.patch		\
@@ -1152,6 +1160,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/tophat-build-with-later-seqan.patch	\
   %D%/packages/patches/totem-meson-easy-codec.patch		\
   %D%/packages/patches/tuxpaint-stamps-path.patch		\
+  %D%/packages/patches/twinkle-include-qregexpvalidator.patch	\
   %D%/packages/patches/unrtf-CVE-2016-10091.patch		\
   %D%/packages/patches/unzip-CVE-2014-8139.patch		\
   %D%/packages/patches/unzip-CVE-2014-8140.patch		\
@@ -1202,6 +1211,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/wpa-supplicant-krack-followups.patch	\
   %D%/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch	\
   %D%/packages/patches/x265-fix-ppc64le-build.patch		\
+  %D%/packages/patches/xapian-revert-5489fb2f8.patch		\
   %D%/packages/patches/xboing-CVE-2004-0149.patch		\
   %D%/packages/patches/xdotool-fix-makefile.patch               \
   %D%/packages/patches/xf86-video-ark-remove-mibstore.patch	\
@@ -1209,7 +1219,9 @@ dist_patch_DATA =						\
   %D%/packages/patches/xf86-video-geode-glibc-2.20.patch	\
   %D%/packages/patches/xf86-video-i128-remove-mibstore.patch	\
   %D%/packages/patches/xf86-video-mach64-glibc-2.20.patch	\
+  %D%/packages/patches/xf86-video-savage-xorg-compat.patch 	\
   %D%/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch \
+  %D%/packages/patches/xf86-video-sis-xorg-compat.patch 	\
   %D%/packages/patches/xf86-video-tga-remove-mibstore.patch	\
   %D%/packages/patches/xfce4-panel-plugins.patch		\
   %D%/packages/patches/xfce4-session-fix-xflock4.patch		\
@@ -1217,7 +1229,11 @@ dist_patch_DATA =						\
   %D%/packages/patches/xinetd-fix-fd-leak.patch			\
   %D%/packages/patches/xinetd-CVE-2013-4342.patch		\
   %D%/packages/patches/xmodmap-asprintf.patch 			\
-  %D%/packages/patches/zathura-plugindir-environment-variable.patch
+  %D%/packages/patches/xorg-server-rotate-fb.patch		\
+  %D%/packages/patches/zathura-pdf-mupdf-link-to-jpeg-libraries.patch \
+  %D%/packages/patches/zathura-plugindir-environment-variable.patch	\
+  %D%/packages/patches/zstd-fix-stdin-list-without-tty.patch	\
+  %D%/packages/patches/zstd-fix-stdin-list-test.patch
 
 MISC_DISTRO_FILES =				\
   %D%/packages/ld-wrapper.in