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| author | zimoun <zimon.toutoune@gmail.com> | 2020-12-04 05:07:38 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-12-09 12:12:36 +0100 |
| commit | 2b224f904a18bd84080119ee57d4f2750a0da732 (patch) | |
| tree | 0ad8c1bbeaaab0cdd9aa11e03c9295874f563b63 /gnu/packages/bioconductor.scm | |
| parent | ece564f07dc7398ff9739555708c9bda31262ceb (diff) | |
| download | guix-2b224f904a18bd84080119ee57d4f2750a0da732.tar.gz | |
gnu: r-cytoml: Fix r-rhdf5libs linking.
* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have a plain directory on the list of libraries to link.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 11 |
1 files changed, 11 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ce831af6d4..299204540d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6426,6 +6426,17 @@ sequential way to mimic the manual gating strategy.") "1d8x49aqc95x1vx456hya5r7mal80pj9l6wmr5x5pb5r8qyzz6yq")))) (properties `((upstream-name . "CytoML"))) (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-linking + (lambda _ + (substitute* "src/Makevars.in" + ;; This is to avoid having a plain directory on the list of + ;; libraries to link. + (("\\{h5lib\\}" match) + (string-append match "/libhdf5.a"))) + #t))))) (inputs `(("libxml2" ,libxml2))) (propagated-inputs |