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authorRicardo Wurmus <rekado@elephly.net>2019-03-06 21:41:48 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-03-06 21:41:48 +0100
commitf8780e96ff9c4d1439f679aff0df559d97d673dc (patch)
tree4e0ecda0fd813b7eed8db4d606b8121b4887b9bd /gnu/packages/bioconductor.scm
parent3a08940e1a38d1f15630b6ad6678b1a79d70049d (diff)
downloadguix-f8780e96ff9c4d1439f679aff0df559d97d673dc.tar.gz
gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-dm-eg-db): ...to here.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm26
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a55439b94e..f08e1a87c4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -386,6 +386,32 @@ in Biostrings objects.")
 annotations for the genome of the model worm Caenorhabditis elegans.")
     (license license:artistic2.0)))
 
+(define-public r-org-dm-eg-db
+  (package
+    (name "r-org-dm-eg-db")
+    (version "3.7.0")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/annotation/" instead of "bioc/".
+              (uri (string-append "https://www.bioconductor.org/packages/"
+                                  "release/data/annotation/src/contrib/"
+                                  "org.Dm.eg.db_" version ".tar.gz"))
+              (sha256
+               (base32
+                "1pqjrzlyg72bjpy8zsxvaglc7jsv176bnyi87xdajmkvsgxpm7b3"))))
+    (properties
+     `((upstream-name . "org.Dm.eg.db")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotationdbi" ,r-annotationdbi)))
+    (home-page "https://www.bioconductor.org/packages/org.Dm.eg.db/")
+    (synopsis "Genome wide annotation for Fly")
+    (description
+     "This package provides mappings from Entrez gene identifiers to various
+annotations for the genome of the model fruit fly Drosophila melanogaster.")
+    (license license:artistic2.0)))
+
 (define-public r-org-dr-eg-db
   (package
     (name "r-org-dr-eg-db")