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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-04-03 16:59:36 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-04-03 17:42:18 +0200 |
| commit | 2bdc88fce75495496f1d7af65f1cadd1e5f51a66 (patch) | |
| tree | 2aa6ea1638d273559f6203af41383c6bd81df444 /gnu/packages/bioconductor.scm | |
| parent | 83546785b2a2da0c7b0c54ac5eb1bf1d5872ebbf (diff) | |
| download | guix-2bdc88fce75495496f1d7af65f1cadd1e5f51a66.tar.gz | |
gnu: Add r-rbowtie2.
* gnu/packages/bioconductor.scm (r-rbowtie2): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3800c2472e..823282397c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4179,3 +4179,26 @@ Currently only Affymetrix oligonucleotide analysis is supported.") This algorithm is based on the publication by Hart et al., 2013 (Pubmed ID 24215113).") (license license:gpl3))) + +(define-public r-rbowtie2 + (package + (name "r-rbowtie2") + (version "1.4.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Rbowtie2" version)) + (sha256 + (base32 + "045cmfwqzcj4zn6r16hkpmr5sd5y0mxvrs5yynf460fdz2p418cr")))) + (properties `((upstream-name . "Rbowtie2"))) + (build-system r-build-system) + (inputs + `(("zlib" ,zlib))) + (home-page "https://bioconductor.org/packages/Rbowtie2/") + (synopsis "R wrapper for Bowtie2 and AdapterRemoval") + (description + "This package provides an R wrapper of the popular @code{bowtie2} +sequencing reads aligner and @code{AdapterRemoval}, a convenient tool for +rapid adapter trimming, identification, and read merging.") + (license license:gpl3+))) |