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authorRicardo Wurmus <rekado@elephly.net>2021-06-05 01:48:07 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-06-05 09:12:39 +0200
commit53ec97713a74da0acb9def81d25ff3e6dd6112f6 (patch)
treedc6480b4fa910c0abd343e11abefa2cbd981df15 /gnu/packages/bioconductor.scm
parent8caab758834cc6e6c3c664e7c7cb138662413fb0 (diff)
downloadguix-53ec97713a74da0acb9def81d25ff3e6dd6112f6.tar.gz
gnu: Add r-metapod.
* gnu/packages/bioconductor.scm (r-metapod): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm29
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d779a11643..fe365b4d86 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5743,6 +5743,35 @@ phylogenetic trees and other tree-like structures with their annotation
 data.")
     (license license:artistic2.0)))
 
+(define-public r-metapod
+  (package
+    (name "r-metapod")
+    (version "1.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "metapod" version))
+       (sha256
+        (base32
+         "1hbcwr6d8gyrf4azh0gi588xkrg6gz7gsb5hbvzqkhplbsp6shlv"))))
+    (properties `((upstream-name . "metapod")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-rcpp" ,r-rcpp)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://bioconductor.org/packages/metapod")
+    (synopsis "Meta-analyses on p-values of differential analyses")
+    (description
+     "This package implements a variety of methods for combining p-values in
+differential analyses of genome-scale datasets.  Functions can combine
+p-values across different tests in the same analysis (e.g., genomic windows in
+ChIP-seq, exons in RNA-seq) or for corresponding tests across separate
+analyses (e.g., replicated comparisons, effect of different treatment
+conditions).  Support is provided for handling log-transformed input p-values,
+missing values and weighting where appropriate.")
+    (license license:gpl3)))
+
 (define-public r-biocsingular
   (package
     (name "r-biocsingular")