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authorRicardo Wurmus <rekado@elephly.net>2019-12-14 16:37:36 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-12-15 15:38:51 +0100
commitb4a22ccaaadb0934e4a44aeb25609d8abdac998b (patch)
tree3ed1596d89f895aa76acf9f9de2a70d304a3b776 /gnu/packages/bioconductor.scm
parente5d722fb4c606bcc0d15e788464d6962a9ff8817 (diff)
downloadguix-b4a22ccaaadb0934e4a44aeb25609d8abdac998b.tar.gz
gnu: Add r-multidataset.
* gnu/packages/bioconductor.scm (r-multidataset): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm35
1 files changed, 35 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index dd52f66918..894a150624 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5044,6 +5044,41 @@ conditions.  A Bayesian network is used to model the regulatory structure and
 Markov-Chain-Monte-Carlo is applied to sample the activity states.")
     (license license:gpl2+)))
 
+(define-public r-multidataset
+  (package
+    (name "r-multidataset")
+    (version "1.14.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "MultiDataSet" version))
+       (sha256
+        (base32
+         "0iw99ymrv3ls023mpmgyagmb5simgsgadpj0k4bnssfaqnklywlj"))))
+    (properties `((upstream-name . "MultiDataSet")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biobase" ,r-biobase)
+       ("r-biocgenerics" ,r-biocgenerics)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-ggplot2" ,r-ggplot2)
+       ("r-ggrepel" ,r-ggrepel)
+       ("r-iranges" ,r-iranges)
+       ("r-limma" ,r-limma)
+       ("r-qqman" ,r-qqman)
+       ("r-s4vectors" ,r-s4vectors)
+       ("r-summarizedexperiment" ,r-summarizedexperiment)))
+    (home-page "https://bioconductor.org/packages/MultiDataSet/")
+    (synopsis "Implementation of MultiDataSet and ResultSet")
+    (description
+     "This package provides an implementation of the BRGE's (Bioinformatic
+Research Group in Epidemiology from Center for Research in Environmental
+Epidemiology) MultiDataSet and ResultSet.  MultiDataSet is designed for
+integrating multi omics data sets and ResultSet is a container for omics
+results.  This package contains base classes for MEAL and rexposome
+packages.")
+    (license license:expat)))
+
 (define-public r-ropls
   (package
     (name "r-ropls")