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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-12-18 15:24:21 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-12-18 15:29:07 +0100 |
| commit | f388834e1152e18463d64d9b3d2499c4f939bdda (patch) | |
| tree | eec57aa4bb8ec057ce37a2deac65d4d6ccf11953 /gnu/packages/bioconductor.scm | |
| parent | c373223e635cd8f5f2770dd0b05f3a310fc7f7dd (diff) | |
| download | guix-f388834e1152e18463d64d9b3d2499c4f939bdda.tar.gz | |
gnu: Add r-reactomepa.
* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 89cdda25d9..25481d5b1d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -7038,3 +7038,33 @@ visualize bioinformatics analyses.") and automates the conversion of node identifiers (e.g. from Entrez IDs to gene symbols).") (license license:agpl3+))) + +(define-public r-reactomepa + (package + (name "r-reactomepa") + (version "1.30.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ReactomePA" version)) + (sha256 + (base32 + "1vwc9kj1l4yi7c4f4lnq0i3wl2nrmmhcxyakz8qak122fi92z3j1")))) + (properties `((upstream-name . "ReactomePA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-dose" ,r-dose) + ("r-enrichplot" ,r-enrichplot) + ("r-ggplot2" ,r-ggplot2) + ("r-ggraph" ,r-ggraph) + ("r-graphite" ,r-graphite) + ("r-igraph" ,r-igraph) + ("r-reactome-db" ,r-reactome-db))) + (home-page "https://guangchuangyu.github.io/software/ReactomePA") + (synopsis "Reactome pathway analysis") + (description + "This package provides functions for pathway analysis based on the +REACTOME pathway database. It implements enrichment analysis, gene set +enrichment analysis and several functions for visualization.") + (license license:gpl2))) |