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authorRicardo Wurmus <rekado@elephly.net>2019-12-17 19:48:50 +0100
committerRicardo Wurmus <rekado@elephly.net>2019-12-17 20:02:18 +0100
commit48bcbef07a773ad4f0b8a07caec2ba1eb6b8bab0 (patch)
tree00b182ca65c871cd518804ec1f92530937f7446a /gnu/packages/bioconductor.scm
parent991554fc920b5cc09e6d005f7d649fde9f4de2c5 (diff)
downloadguix-48bcbef07a773ad4f0b8a07caec2ba1eb6b8bab0.tar.gz
gnu: Add r-bioassayr.
* gnu/packages/bioconductor.scm (r-bioassayr): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm33
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2423e74b3f..0b3df4f59c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6893,3 +6893,36 @@ libraries with a wide spectrum of algorithms.  In addition, it offers
 visualization functions for compound clustering results and chemical
 structures.")
     (license license:artistic2.0)))
+
+(define-public r-bioassayr
+  (package
+    (name "r-bioassayr")
+    (version "1.24.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "bioassayR" version))
+       (sha256
+        (base32
+         "08vxkvxhqnryfbj4dwk3ifb9pn544www9zk2pj9fjbh5xfpwi7zw"))))
+    (properties `((upstream-name . "bioassayR")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biocgenerics" ,r-biocgenerics)
+       ("r-chemminer" ,r-chemminer)
+       ("r-dbi" ,r-dbi)
+       ("r-matrix" ,r-matrix)
+       ("r-rjson" ,r-rjson)
+       ("r-rsqlite" ,r-rsqlite)
+       ("r-xml" ,r-xml)))
+    (home-page "https://github.com/TylerBackman/bioassayR")
+    (synopsis "Cross-target analysis of small molecule bioactivity")
+    (description
+     "bioassayR is a computational tool that enables simultaneous analysis of
+thousands of bioassay experiments performed over a diverse set of compounds
+and biological targets.  Unique features include support for large-scale
+cross-target analyses of both public and custom bioassays, generation of
+@dfn{high throughput screening fingerprints} (HTSFPs), and an optional
+preloaded database that provides access to a substantial portion of publicly
+available bioactivity data.")
+    (license license:artistic2.0)))