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authorzimoun <zimon.toutoune@gmail.com>2020-09-14 18:07:43 +0200
committerRicardo Wurmus <rekado@elephly.net>2020-09-14 21:39:30 +0200
commit8863c14cd856d917552017646dbf4a36654e9515 (patch)
tree8d3ec6c19baa7a0d5807a74d88b027a7225ff8ad /gnu/packages/bioconductor.scm
parent916a3e59ab1df1d530f7558b8d653d01a846ee1b (diff)
downloadguix-8863c14cd856d917552017646dbf4a36654e9515.tar.gz
gnu: r-beachmat: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-beachmat): Move from here...
* gnu/packages/bioconductor.scm (r-beachmat): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r--gnu/packages/bioconductor.scm25
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fbdb7eedb2..2796f4f90e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8347,6 +8347,31 @@ routines.")
 objects from the @code{graph} package.")
     (license license:epl1.0)))
 
+(define-public r-beachmat
+  (package
+    (name "r-beachmat")
+    (version "2.4.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "beachmat" version))
+       (sha256
+        (base32
+         "1vl6jbf9ia78cm4ikdb8vz04jv4b46zhvg5i006c63a9pzw7zhxi"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biocgenerics" ,r-biocgenerics)
+       ("r-delayedarray" ,r-delayedarray)
+       ("r-matrix" ,r-matrix)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
+    (home-page "https://bioconductor.org/packages/beachmat")
+    (synopsis "Compiling Bioconductor to handle each matrix type")
+    (description "This package provides a consistent C++ class interface for a
+variety of commonly used matrix types, including sparse and HDF5-backed
+matrices.")
+    (license license:gpl3)))
+
 (define-public r-singlecellexperiment
   (package
     (name "r-singlecellexperiment")