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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-12-13 22:57:59 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-12-14 13:35:53 +0100 |
| commit | 8e6f63dd83b06962e155a88f101eda9c18f3ca7e (patch) | |
| tree | 9377837c4b846a82bf49dac34dc93e21f9b7aa19 /gnu/packages/bioconductor.scm | |
| parent | 3e9e242aa52d4f3b462052cacf3f7ab47a44b72a (diff) | |
| download | guix-8e6f63dd83b06962e155a88f101eda9c18f3ca7e.tar.gz | |
gnu: Add r-activepathways.
* gnu/packages/bioconductor.scm (r-activepathways): New variable.
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ca29fb5a3e..1ef636d7f6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6093,3 +6093,33 @@ simple somatic mutations (SNVs and Indels) in functional elements across the human genome. ActiveDriverWGS detects coding and noncoding driver elements using whole genome sequencing data.") (license license:gpl3))) + +;; This is a CRAN package, but it depends on Bioconductor packages, so we put +;; it here. +(define-public r-activepathways + (package + (name "r-activepathways") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ActivePathways" version)) + (sha256 + (base32 + "1xb0d1svmzw404pv8ja6wr4773k7x2lxkrzrayilvzqbfzj1wx20")))) + (properties + `((upstream-name . "ActivePathways"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-ggplot2" ,r-ggplot2) + ("r-metap" ,r-metap))) + (home-page "https://cran.r-project.org/web/packages/ActivePathways/") + (synopsis "Multivariate pathway enrichment analysis") + (description + "This package represents an integrative method of analyzing multi omics +data that conducts enrichment analysis of annotated gene sets. ActivePathways +uses a statistical data fusion approach, rationalizes contributing evidence +and highlights associated genes, improving systems-level understanding of +cellular organization in health and disease.") + (license license:gpl3))) |