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| author | Efraim Flashner <efraim@flashner.co.il> | 2020-11-09 11:05:23 +0200 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2020-11-09 11:34:08 +0200 |
| commit | 4b3a535770b19d9c17196bd6e5c9337233d9fb92 (patch) | |
| tree | a489af8ef751a5308417a4283929aeb15cca74e2 /gnu/packages/bioinformatics.scm | |
| parent | 4dcd19d3ff143e7ef5ed1584a9ace65c348d1dfa (diff) | |
| download | guix-4b3a535770b19d9c17196bd6e5c9337233d9fb92.tar.gz | |
gnu: macs: Remove generated code.
* gnu/packages/bioinformatics.scm (macs)[source]: Add snippet to remove cython generated code. [native-inputs]: Add python-cython.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 17 |
1 files changed, 15 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 010742b37b..06972dee51 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4475,7 +4475,19 @@ experiments.") (file-name (git-file-name name version)) (sha256 (base32 - "1c5gxr0mk6hkd4vclf0k00wvyvzw2vrmk52c85338p7aqjwg6n15")))) + "1c5gxr0mk6hkd4vclf0k00wvyvzw2vrmk52c85338p7aqjwg6n15")) + (modules '((guix build utils))) + ;; Remove files generated by Cython + (snippet + '(begin + (for-each (lambda (file) + (let ((generated-file + (string-append (string-drop-right file 3) "c"))) + (when (file-exists? generated-file) + (delete-file generated-file)))) + (find-files "." "\\.pyx$")) + (delete-file "MACS2/IO/CallPeakUnitPrecompiled.c") + #t)))) (build-system python-build-system) (arguments `(#:phases @@ -4489,7 +4501,8 @@ experiments.") (inputs `(("python-numpy" ,python-numpy))) (native-inputs - `(("python-pytest" ,python-pytest))) + `(("python-cython" ,python-cython) + ("python-pytest" ,python-pytest))) (home-page "https://github.com/macs3-project/MACS") (synopsis "Model based analysis for ChIP-Seq data") (description |