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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 20:24:18 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 20:26:46 +0100 |
| commit | 152bebd9e0c7fc0863d6b82af014e61a8cb6a488 (patch) | |
| tree | 16ed100c552b041adb1b426343b1199dd91eab2c /gnu/packages/bioinformatics.scm | |
| parent | b113f39019913ad8eda4d72624ce9769920d22cb (diff) | |
| download | guix-152bebd9e0c7fc0863d6b82af014e61a8cb6a488.tar.gz | |
gnu: gemma: Update to 0.98.
* gnu/local.mk (dist_patch_DATA): Remove patch. * gnu/packages/patches/gemma-intel-compat.patch: Remove file. * gnu/packages/bioinformatics.scm (gemma): Update to 0.98. [source]: Remove patch. [inputs]: Add eigen, gfortran:lib, and openblas. [arguments]: Add phase "find-eigen".
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 19 |
1 files changed, 15 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3cd0e03587..5337b7bf02 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2829,7 +2829,7 @@ comment or quality sections.") (define-public gemma (package (name "gemma") - (version "0.96") + (version "0.98") (source (origin (method git-fetch) (uri (git-reference @@ -2838,11 +2838,13 @@ comment or quality sections.") (file-name (git-file-name name version)) (sha256 (base32 - "0sa4mllp7890v5pss0mm02ik8yixl7az3vprcw3kp7qmr9gwrdai")) - (patches (search-patches "gemma-intel-compat.patch")))) + "1s3ncnbn45r2hh1cvrqky1kbqq6546biypr4f5mkw1kqlrgyh0yg")))) (inputs - `(("gsl" ,gsl) + `(("eigen" ,eigen) + ("gfortran" ,gfortran "lib") + ("gsl" ,gsl) ("lapack" ,lapack) + ("openblas" ,openblas) ("zlib" ,zlib))) (build-system gnu-build-system) (arguments @@ -2857,6 +2859,15 @@ comment or quality sections.") #:phases (modify-phases %standard-phases (delete 'configure) + (add-after 'unpack 'find-eigen + (lambda* (#:key inputs #:allow-other-keys) + ;; Ensure that Eigen headers can be found + (setenv "CPLUS_INCLUDE_PATH" + (string-append (getenv "CPLUS_INCLUDE_PATH") + ":" + (assoc-ref inputs "eigen") + "/include/eigen3")) + #t)) (add-before 'build 'bin-mkdir (lambda _ (mkdir-p "bin") |