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| author | Lars-Dominik Braun <lars@6xq.net> | 2021-10-06 14:10:18 +0200 |
|---|---|---|
| committer | Lars-Dominik Braun <lars@6xq.net> | 2021-10-08 09:13:55 +0200 |
| commit | 26488f63b8e4845cc9ed6e91b0643936b5eaa509 (patch) | |
| tree | cb1c599f2daf2c64914c700a408dc0756335d6de /gnu/packages/bioinformatics.scm | |
| parent | 07f2e4993b5b80008273de0bb756659321e74183 (diff) | |
| download | guix-26488f63b8e4845cc9ed6e91b0643936b5eaa509.tar.gz | |
gnu: pigx-rnaseq: Remove dependency on pandoc-citeproc.
* gnu/packages/patches/pigx-rnaseq-no-citeproc.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/bioinformatics.scm (pigx-rnaseq)[source]: Use it. [native-inputs]: Add automake/autoconf.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 10 |
1 files changed, 8 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 150bbc361f..f5de16877e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10489,7 +10489,8 @@ once. This package provides tools to perform Drop-seq analyses.") "/pigx_rnaseq-" version ".tar.gz")) (sha256 (base32 - "1ja3bda1appxrzbfy7wp7khy30mm7lic8xbq3gkbpc5bld3as9cm")))) + "1ja3bda1appxrzbfy7wp7khy30mm7lic8xbq3gkbpc5bld3as9cm")) + (patches (search-patches "pigx-rnaseq-no-citeproc.patch")))) (build-system gnu-build-system) (arguments `(#:parallel-tests? #f ; not supported @@ -10502,6 +10503,9 @@ once. This package provides tools to perform Drop-seq analyses.") (substitute* "Makefile.in" (("^ tests/test_multiqc/test.sh") "") (("^ test.sh") "")))) + (add-before 'bootstrap 'autoreconf + (lambda _ + (invoke "autoreconf" "-vif"))) (add-before 'check 'set-timezone ;; The readr package is picky about timezones. (lambda* (#:key inputs #:allow-other-keys) @@ -10545,7 +10549,9 @@ once. This package provides tools to perform Drop-seq analyses.") ("python-deeptools" ,python-deeptools) ("python-pyyaml" ,python-pyyaml))) (native-inputs - `(("tzdata" ,tzdata))) + `(("tzdata" ,tzdata) + ("automake" ,automake) + ("autoconf" ,autoconf))) (home-page "https://bioinformatics.mdc-berlin.de/pigx/") (synopsis "Analysis pipeline for RNA sequencing experiments") (description "PiGX RNAseq is an analysis pipeline for preprocessing and |