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| author | Efraim Flashner <efraim@flashner.co.il> | 2023-09-19 22:11:45 +0300 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2023-09-20 09:53:52 +0300 |
| commit | 7a2ee8524ab83fd3f22deda388f2fd0628cd7271 (patch) | |
| tree | d5c8e9768295db73ce3debeb1778d0dc0ac84046 /gnu/packages/bioinformatics.scm | |
| parent | 4b3b2e63007acee9e3a8c2ea728190480d092c3c (diff) | |
| download | guix-7a2ee8524ab83fd3f22deda388f2fd0628cd7271.tar.gz | |
gnu: wfmash: Update to 0.10.5.
* gnu/packages/bioinformatics.scm (wfmash): Update to 0.10.5. [source]: Update to changes in source code. [arguments]: Add configure-flag to enable more features. [native-inputs]: Add pkg-config.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 15 |
1 files changed, 7 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b909cd5ee0..6acf37b312 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -20463,7 +20463,7 @@ based on the pairwise alignment of hidden Markov models (HMMs).") (define-public wfmash (package (name "wfmash") - (version "0.8.1") + (version "0.10.5") (source (origin (method url-fetch) @@ -20471,7 +20471,7 @@ based on the pairwise alignment of hidden Markov models (HMMs).") version "/wfmash-v" version ".tar.gz")) (sha256 (base32 - "031cm1arpfckvihb28vlk69mirpnmlag81zcscfba1bac58wvr7c")) + "1jsvnnh14h3ir4l13qhmglhd25kzwvni9apgvr1lbikqwgrpkiq4")) (snippet #~(begin (use-modules (guix build utils)) @@ -20482,14 +20482,12 @@ based on the pairwise alignment of hidden Markov models (HMMs).") "<atomic_queue/atomic_queue.h>")) ;; Remove compiler optimizations. (substitute* (find-files "." "CMakeLists\\.txt") - (("-mcx16 ") "") - (("-march=native ") "")) - ;; Allow building on architectures other than x86_64. - (substitute* "src/common/dset64.hpp" - (("!__x86_64__") "0")))))) + (("-march=native ") "")))))) (build-system cmake-build-system) (arguments (list + #:configure-flags + #~(list "-DWFA_PNG_AND_TSV=ON") #:phases #~(modify-phases %standard-phases (replace 'check @@ -20602,7 +20600,8 @@ based on the pairwise alignment of hidden Markov models (HMMs).") jemalloc zlib)) (native-inputs - (list samtools)) + (list pkg-config + samtools)) (synopsis "Base-accurate DNA sequence aligner") (description "@code{wfmash} is a DNA sequence read mapper based on mash distances and the wavefront alignment algorithm. It is a fork of MashMap that |