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| author | Efraim Flashner <efraim@flashner.co.il> | 2023-10-21 20:34:46 +0300 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2023-10-21 20:34:46 +0300 |
| commit | e6af40d7b46b5c9e397a38c62c885fb42ccd9d26 (patch) | |
| tree | e4b264c393e39c475e2476d152f747a84d5aa4d0 /gnu/packages/bioinformatics.scm | |
| parent | 760a210b747a93e7b6256509d1375575b9a1ec2f (diff) | |
| parent | 003dc790fdccb2e762edbe09abbc1b6f24f18de0 (diff) | |
| download | guix-e6af40d7b46b5c9e397a38c62c885fb42ccd9d26.tar.gz | |
Merge remote-tracking branch 'origin/rust-team'
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 14 |
1 files changed, 3 insertions, 11 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 45afde699d..ea0fe17b21 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4695,26 +4695,17 @@ accurately delineate genomic rearrangements throughout the genome.") (arguments (list #:install-source? #false ;fails - #:tests? #false ;"cargo test" ignores build.rs + #:tests? #true #:phases #~(modify-phases %standard-phases (add-after 'unpack 'prepare-test-files (lambda _ (delete-file "Cargo.lock") - (substitute* "liftover-rs/Cargo.toml" - (("anyhow = \"1\"") "anyhow = \"1.0.65\"")) (substitute* "liftover-rs/prepare-test.sh" (("/bin/bash") (string-append #$(this-package-native-input "bash") "/bin/bash"))) (invoke "bash" "prepare-test-files.sh"))) - (add-before 'patch-cargo-checksums 'do-not-build-xz - (lambda _ - ;; Detection of liblzma (in rust-lzma-sys, pulled in by - ;; rust-hts-sys) doesn't seem to work, or perhaps it really does - ;; request a static build somewhere. - (substitute* "guix-vendor/rust-lzma-sys-0.1.17.tar.xz/build.rs" - (("if .want_static && .msvc && pkg_config::probe_library\\(\"liblzma\"\\).is_ok\\(\\)") "")))) (add-before 'install 'chdir (lambda _ (chdir "transanno")))) #:cargo-inputs @@ -4736,7 +4727,8 @@ accurately delineate genomic rearrangements throughout the genome.") #:cargo-development-inputs `(("rust-clap" ,rust-clap-2) ("rust-lazy-static" ,rust-lazy-static-1)))) - (native-inputs (list bash)) + (native-inputs (list bash pkg-config)) + (inputs (list xz)) (home-page "https://github.com/informationsea/transanno") (synopsis "LiftOver tool for new genome assemblies") (description "This package provides an accurate VCF/GFF3/GTF LiftOver tool |