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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-09-21 10:54:32 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-09-21 11:09:45 +0200 |
| commit | 29634a4ce3f3cca09b0980f8a49d47b31c2b2600 (patch) | |
| tree | 65f22cd8b256581729673b97d48b3eaaf5d37953 /gnu/packages/bioinformatics.scm | |
| parent | 4bd64dde2b1cb5e959519da257a82a46d8b187eb (diff) | |
| download | guix-29634a4ce3f3cca09b0980f8a49d47b31c2b2600.tar.gz | |
gnu: Add r-bamutils.
* gnu/packages/bioinformatics.scm (r-bamutils): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 66799251ff..46f147f496 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7306,6 +7306,38 @@ sequence.") @code{GenomicRanges} operations.") (license license:gpl2)))) +(define-public r-bamutils + (let ((commit "639dba901f16944fa1b7a8d7048701ba86a2cdb8") + (revision "1")) + (package + (name "r-bamutils") + (version (git-version "0.0.0.9000" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/mskilab/bamutils/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0qwby2v5rydnipvf1iv1wz9nf02yq98k0xbc4inf9mqc54jwacs0")))) + (properties `((upstream-name . "bamUtils"))) + (build-system r-build-system) + (propagated-inputs + (list r-abind + r-biocgenerics + r-data-table + r-genomicalignments + r-genomicranges + r-gutils + r-rsamtools + r-variantannotation)) + (home-page "https://github.com/mskilab/bamutils/") + (synopsis "Utility functions for manipulating BAMs") + (description "This package provides utility functions for manipulating +BAM files.") + (license license:gpl2)))) + (define-public r-presto (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad") (revision "0")) |