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| author | Ben Woodcroft <donttrustben@gmail.com> | 2016-02-15 22:22:01 +1000 |
|---|---|---|
| committer | Ben Woodcroft <donttrustben@gmail.com> | 2016-02-15 22:54:25 +1000 |
| commit | cf6edaba741e2e45d87feed514774cb6667a1074 (patch) | |
| tree | 7b093993f4883e2f048ec752d9fa960a51be5146 /gnu/packages/bioinformatics.scm | |
| parent | a64a8c465dd2c74fa064f7d2b0c20430022d3248 (diff) | |
| download | guix-cf6edaba741e2e45d87feed514774cb6667a1074.tar.gz | |
gnu: vsearch: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (vsearch): Update to 1.10.0. [origin]: Adapt to changes in bundling of cityhash.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 27 |
1 files changed, 19 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 74761c0464..47d4893ef7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1,3 +1,4 @@ + ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2014, 2015, 2016 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015, 2016 Ben Woodcroft <donttrustben@gmail.com> @@ -3353,7 +3354,7 @@ data in the form of VCF files.") (define-public vsearch (package (name "vsearch") - (version "1.4.1") + (version "1.10.0") (source (origin (method url-fetch) @@ -3363,7 +3364,7 @@ data in the form of VCF files.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "0b1359wbzgb2cm04h7dq05v80vik88hnsv298xxd1q1f2q4ydni7")) + "1i3bad7gnn2y3a1yfixzshd99xdkjc8w5bxzgifpysc6jiljwvb5")) (modules '((guix build utils))) (snippet '(begin @@ -3373,14 +3374,24 @@ data in the form of VCF files.") -O3 -mtune=native -Wall -Wsign-compare") (string-append "AM_CXXFLAGS=-lcityhash" " -O3 -Wall -Wsign-compare")) - (("^__top_builddir__bin_vsearch_SOURCES = cityhash/city.h \\\\") + (("^__top_builddir__bin_vsearch_SOURCES = city.h \\\\") "__top_builddir__bin_vsearch_SOURCES = \\") - (("^cityhash/config.h \\\\") "\\") - (("^cityhash/city.cc \\\\") "\\")) + (("^city.h \\\\") "\\") + (("^citycrc.h \\\\") "\\") + (("^libcityhash_a.*") "") + (("noinst_LIBRARIES = libcpu_sse2.a libcpu_ssse3.a \ +libcityhash.a") + "noinst_LIBRARIES = libcpu_sse2.a libcpu_ssse3.a") + (("__top_builddir__bin_vsearch_LDADD = libcpu_ssse3.a \ +libcpu_sse2.a libcityhash.a") + "__top_builddir__bin_vsearch_LDADD = libcpu_ssse3.a \ +libcpu_sse2.a -lcityhash")) (substitute* "src/vsearch.h" - (("^\\#include \"cityhash/city.h\"") - "#include <city.h>")) - (delete-file-recursively "src/cityhash") + (("^\\#include \"city.h\"") "#include <city.h>") + (("^\\#include \"citycrc.h\"") "#include <citycrc.h>")) + (delete-file "src/city.h") + (delete-file "src/citycrc.h") + (delete-file "src/city.cc") #t)))) (build-system gnu-build-system) (arguments |