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| author | zimoun <zimon.toutoune@gmail.com> | 2020-12-23 19:06:28 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2020-12-29 17:40:28 +0100 |
| commit | 2a4322f7c34b3cf81ae3ff39527404c22e68399a (patch) | |
| tree | 4d1141e55f34fffa188c6e71e09d12de15886e74 /gnu/packages/bioinformatics.scm | |
| parent | 69a5e066c17452f3ef7843451510ae818184324b (diff) | |
| download | guix-2a4322f7c34b3cf81ae3ff39527404c22e68399a.tar.gz | |
gnu: r-gviz: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-gviz): Move from here... * gnu/packages/bioconductor.scm (r-gviz): ...to here.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 49 |
1 files changed, 0 insertions, 49 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ab187dcddd..caa505fdab 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10785,55 +10785,6 @@ interpretation of members of a collection of association statistics on a family of feature/genome hypotheses.") (license license:artistic2.0))) -(define-public r-gviz - (package - (name "r-gviz") - (version "1.34.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "Gviz" version)) - (sha256 - (base32 - "0v7bz46b91dnrr55ah42ljj1i2xs3090s4w0lw8098pag00p4vh2")))) - (properties `((upstream-name . "Gviz"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-biomart" ,r-biomart) - ("r-biostrings" ,r-biostrings) - ("r-biovizbase" ,r-biovizbase) - ("r-bsgenome" ,r-bsgenome) - ("r-digest" ,r-digest) - ("r-ensembldb" ,r-ensembldb) - ("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicalignments" ,r-genomicalignments) - ("r-genomicfeatures" ,r-genomicfeatures) - ("r-genomicranges" ,r-genomicranges) - ("r-iranges" ,r-iranges) - ("r-lattice" ,r-lattice) - ("r-latticeextra" ,r-latticeextra) - ("r-matrixstats" ,r-matrixstats) - ("r-rcolorbrewer" ,r-rcolorbrewer) - ("r-rsamtools" ,r-rsamtools) - ("r-rtracklayer" ,r-rtracklayer) - ("r-s4vectors" ,r-s4vectors) - ("r-xvector" ,r-xvector))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/Gviz") - (synopsis "Plotting data and annotation information along genomic coordinates") - (description - "Genomic data analyses requires integrated visualization of known genomic -information and new experimental data. Gviz uses the biomaRt and the -rtracklayer packages to perform live annotation queries to Ensembl and UCSC -and translates this to e.g. gene/transcript structures in viewports of the -grid graphics package. This results in genomic information plotted together -with your data.") - (license license:artistic2.0))) - (define-public r-dropbead (let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247") (revision "2")) |