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author | Ricardo Wurmus <rekado@elephly.net> | 2018-03-16 15:40:01 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2018-03-16 15:40:31 +0100 |
commit | c1c9cc664b600b1de7557e44a67471ef1556f793 (patch) | |
tree | c99197c71180691f9c119b380cf835d678046065 /gnu/packages/bioinformatics.scm | |
parent | fe52a215e53514d1857131e3a75104a081e415b6 (diff) | |
download | guix-c1c9cc664b600b1de7557e44a67471ef1556f793.tar.gz |
gnu: Add pigx.
* gnu/packages/bioinformatics.scm (pigx): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index fa4a4957b7..78754793a5 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12941,6 +12941,42 @@ and interactive quality reports. The pipeline is designed to work with UMI based methods.") (license license:gpl3+))) +(define-public pigx + (package + (name "pigx") + (version "0.0.1") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/BIMSBbioinfo/pigx/" + "releases/download/v" version + "/pigx-" version ".tar.gz")) + (sha256 + (base32 + "1nxb2hbp40yg3j7n56k4dhsd2fl1j8g0wpiiln56prqzljwnlgmf")))) + (build-system gnu-build-system) + (inputs + `(("python" ,python) + ("pigx-bsseq" ,pigx-bsseq) + ("pigx-chipseq" ,pigx-chipseq) + ("pigx-rnaseq" ,pigx-rnaseq) + ("pigx-scrnaseq" ,pigx-scrnaseq))) + (home-page "http://bioinformatics.mdc-berlin.de/pigx/") + (synopsis "Analysis pipelines for genomics") + (description "PiGx is a collection of genomics pipelines. It includes the +following pipelines: + +@itemize +@item PiGx BSseq for raw fastq read data of bisulfite experiments +@item PiGx RNAseq for RNAseq samples +@item PiGx scRNAseq for single cell dropseq analysis +@item PiGx ChIPseq for reads from ChIPseq experiments +@end itemize + +All pipelines are easily configured with a simple sample sheet and a +descriptive settings file. The result is a set of comprehensive, interactive +HTML reports with interesting findings about your samples.") + (license license:gpl3+))) + (define-public r-diversitree (package (name "r-diversitree") |