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| author | Ricardo Wurmus <rekado@elephly.net> | 2017-11-07 17:19:25 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2017-11-07 23:32:44 +0100 |
| commit | 2e4ce60e7ce78c2aeb6d2921a99728f83e0d3563 (patch) | |
| tree | 3edf3d17985d6596fda1d600ac0ea7c9229f65e9 /gnu/packages/bioinformatics.scm | |
| parent | 4272000661f61969e1fe64d950e593eb56642a36 (diff) | |
| download | guix-2e4ce60e7ce78c2aeb6d2921a99728f83e0d3563.tar.gz | |
gnu: Add r-gwascat.
* gnu/packages/bioinformatics.scm (r-gwascat): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 90892f1903..6ca40c586c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10080,6 +10080,46 @@ grid graphics package. This results in genomic information plotted together with your data.") (license license:artistic2.0))) +(define-public r-gwascat + (package + (name "r-gwascat") + (version "2.10.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "gwascat" version)) + (sha256 + (base32 + "0n5x5i5v6a8wpn5mxmlpkl34b4kyypmymiwww6g61zch7xqrgywi")))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-annotationhub" ,r-annotationhub) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biostrings" ,r-biostrings) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-ggbio" ,r-ggbio) + ("r-ggplot2" ,r-ggplot2) + ("r-gqtlstats" ,r-gqtlstats) + ("r-graph" ,r-graph) + ("r-gviz" ,r-gviz) + ("r-homo-sapiens" ,r-homo-sapiens) + ("r-iranges" ,r-iranges) + ("r-rsamtools" ,r-rsamtools) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-snpstats" ,r-snpstats) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-variantannotation" ,r-variantannotation))) + (home-page "https://bioconductor.org/packages/gwascat") + (synopsis "Tools for data in the EMBL-EBI GWAS catalog") + (description + "This package provides tools for representing and modeling data in the +EMBL-EBI GWAS catalog.") + (license license:artistic2.0))) + (define-public r-qvalue (package (name "r-qvalue") |