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| author | Maxim Cournoyer <maxim.cournoyer@gmail.com> | 2022-05-31 14:19:59 -0400 |
|---|---|---|
| committer | Maxim Cournoyer <maxim.cournoyer@gmail.com> | 2022-05-31 14:54:17 -0400 |
| commit | ad030a0b7dc0225dae03686a51a9b7b0236cad34 (patch) | |
| tree | 9f5717c5e44b87b0d7001b5eb6c31a69ca96b803 /gnu/packages/bioinformatics.scm | |
| parent | d397cb6207ab96d476d4ea8880a675b67f429bf5 (diff) | |
| download | guix-ad030a0b7dc0225dae03686a51a9b7b0236cad34.tar.gz | |
gnu: Remove pplacer-scripts.
* gnu/packages/bioinformatics.scm (pplacer-scripts): Delete variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 39 |
1 files changed, 0 insertions, 39 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 64e4171f8f..d004124ddb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13245,45 +13245,6 @@ Additionally, the AdapterRemoval may be used to recover a consensus adapter sequence for paired-ended data, for which this information is not available.") (license license:gpl3+))) -;; This package is installed alongside 'pplacer'. It is a separate package so -;; that it can use the python-build-system for the scripts that are -;; distributed alongside the main OCaml binaries. -(define pplacer-scripts - (package - (inherit pplacer) - (name "pplacer-scripts") - (build-system python-build-system) - (arguments - `(#:python ,python-2 - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'enter-scripts-dir - (lambda _ (chdir "scripts") #t)) - (replace 'check - (lambda _ (invoke "python" "-m" "unittest" "discover" "-v") #t)) - (add-after 'install 'wrap-executables - (lambda* (#:key inputs outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin"))) - (let ((path (string-append - (assoc-ref inputs "hmmer") "/bin:" - (assoc-ref inputs "infernal") "/bin"))) - (display path) - (wrap-program (string-append bin "/refpkg_align.py") - `("PATH" ":" prefix (,path)))) - (let ((path (string-append - (assoc-ref inputs "hmmer") "/bin"))) - (wrap-program (string-append bin "/hrefpkg_query.py") - `("PATH" ":" prefix (,path))))) - #t))))) - (inputs - `(("infernal" ,infernal) - ("hmmer" ,hmmer))) - (propagated-inputs - `(("python-biopython" ,python2-biopython) - ("taxtastic" ,taxtastic))) - (synopsis "Pplacer Python scripts"))) - (define-public checkm (package (name "checkm") |