diff options
| author | Marius Bakke <marius@gnu.org> | 2020-10-13 23:39:27 +0200 |
|---|---|---|
| committer | Marius Bakke <marius@gnu.org> | 2020-10-13 23:39:27 +0200 |
| commit | f7175626ffce578be1bc6df4916a129f86557872 (patch) | |
| tree | 2eb0040522f2883764b3e09dc36595d68eeb14c1 /gnu/packages/bioinformatics.scm | |
| parent | 2b6ecdf41a09ab9ecae06d7c537583a2f0f28efc (diff) | |
| parent | e8c5533d26b4441c96e9ae92350efcb24d787c4b (diff) | |
| download | guix-f7175626ffce578be1bc6df4916a129f86557872.tar.gz | |
Merge branch 'master' into staging
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 19 |
1 files changed, 13 insertions, 6 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cbb2649bb4..b0edfa8403 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4225,6 +4225,13 @@ performance.") (base32 "16ljv43sc3fxmv63w7b2ff8m1s7h89xhazwmbm1bicz8axq8fjz0")))) (build-system gnu-build-system) + ;; Let htslib translate "gs://" and "s3://" to regular https links with + ;; "--enable-gcs" and "--enable-s3". For these options to work, we also + ;; need to set "--enable-libcurl". + (arguments + `(#:configure-flags '("--enable-gcs" + "--enable-libcurl" + "--enable-s3"))) (inputs `(("curl" ,curl) ("openssl" ,openssl))) @@ -7539,13 +7546,13 @@ also known as views, in a controlled vocabulary.") (define-public r-biocstyle (package (name "r-biocstyle") - (version "2.16.0") + (version "2.16.1") (source (origin (method url-fetch) (uri (bioconductor-uri "BiocStyle" version)) (sha256 (base32 - "07rjl2n4sazdg581zh7w3yykzphgr2gpz41ba4ryqs7347vh9nbf")))) + "09sz2bnbfbj8wz16k0q8xrvag9fldxqyp5vbg9pvd9skh28hv7c7")))) (properties `((upstream-name . "BiocStyle"))) (build-system r-build-system) @@ -8848,13 +8855,13 @@ of gene-level counts.") (define-public r-rhdf5 (package (name "r-rhdf5") - (version "2.32.2") + (version "2.32.3") (source (origin (method url-fetch) (uri (bioconductor-uri "rhdf5" version)) (sha256 (base32 - "1v6ygi0avh3gmaj2ld2nr7vww4ipw39b5kqci9w27i3ja985lb8j")))) + "0fnx60dpf6s2qwq48lg98g18g8k7wgm66pw0kamlbb7l2hnwycvf")))) (build-system r-build-system) (propagated-inputs `(("r-rhdf5lib" ,r-rhdf5lib))) @@ -10272,14 +10279,14 @@ interval to data view, mismatch pileup, and several splicing summaries.") (define-public r-gqtlbase (package (name "r-gqtlbase") - (version "1.20.0") + (version "1.20.4") (source (origin (method url-fetch) (uri (bioconductor-uri "gQTLBase" version)) (sha256 (base32 - "06xvzp4fn3qfa46ggg8kxi267gbyd821vvx4040173xkqxpr0g5j")))) + "1ly14vhhqxjpbxjypi6ppd37dycabdhf4ny4nsvp9969k418zv41")))) (properties `((upstream-name . "gQTLBase"))) (build-system r-build-system) (propagated-inputs |