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| author | Efraim Flashner <efraim@flashner.co.il> | 2021-01-19 10:33:19 +0200 |
|---|---|---|
| committer | Efraim Flashner <efraim@flashner.co.il> | 2021-01-19 10:33:19 +0200 |
| commit | 797585746b1e74aa47f06f0e757cbb6c0a262088 (patch) | |
| tree | 4a8494c21dcd5bec70e4e47ccbf26e771941505f /gnu/packages/bioinformatics.scm | |
| parent | 63806fedf27024644c33e8c34fb594c5474bf3a1 (diff) | |
| download | guix-797585746b1e74aa47f06f0e757cbb6c0a262088.tar.gz | |
gnu: freebayes: Extend test timeout on slower architectures.
* gnu/packages/bioinformatics.scm (freebayes)[arguments]: Use custom 'check phase on aarch64-linux and armhf-linux to extend the test timeout.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 12 |
1 files changed, 11 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 9d9cd05969..908ae8a194 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -143,6 +143,7 @@ #:use-module (gnu packages xml) #:use-module (gnu packages xorg) #:use-module (srfi srfi-1) + #:use-module (srfi srfi-26) #:use-module (ice-9 match)) (define-public aragorn @@ -15168,7 +15169,16 @@ manipulations on VCF files.") (unpack "vcflib-src" "vcflib") (unpack "intervaltree-src" "vcflib/intervaltree") (unpack "test-simple-bash-src" "test/test-simple-bash")) - #t)))))) + #t))) + ;; The slow tests take longer than the specified timeout. + ,@(if (any (cute string=? <> (%current-system)) + '("armhf-linux" "aarch64-linux")) + '((replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "meson" "test" "--timeout-multiplier" "5")) + #t))) + '())))) (home-page "https://github.com/ekg/freebayes") (synopsis "Haplotype-based variant detector") (description "FreeBayes is a Bayesian genetic variant detector designed to |