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authorRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-03-18 12:16:17 +0100
committerRicardo Wurmus <ricardo.wurmus@mdc-berlin.de>2016-04-11 11:03:27 +0200
commitae2462f7dd8abfdd6e5a603c55443ec5246936f0 (patch)
tree46e0240af4b8472a0e612455ba5b746803261f2e /gnu/packages/bioinformatics.scm
parentc90a4baff6cbc35ccd6af3cdac72f314c9eceab3 (diff)
downloadguix-ae2462f7dd8abfdd6e5a603c55443ec5246936f0.tar.gz
gnu: Add r-motifrg.
* gnu/packages/bioinformatics.scm (r-motifrg): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 58268dc258..4ea7534568 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4800,6 +4800,33 @@ Stephens (1990).")
 by UCSC (hg19, February 2009) and stored in Biostrings objects.")
     (license license:artistic2.0)))
 
+(define-public r-motifrg
+  (package
+    (name "r-motifrg")
+    (version "1.14.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "motifRG" version))
+       (sha256
+        (base32
+         "1v9zm5629k2lcqbbgw8bwflvbircyxkfavbkvmbd212kgwcng8vn"))))
+    (properties `((upstream-name . "motifRG")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biostrings" ,r-biostrings)
+       ("r-bsgenome" ,r-bsgenome)
+       ("r-bsgenome.hsapiens.ucsc.hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
+       ("r-iranges" ,r-iranges)
+       ("r-seqlogo" ,r-seqlogo)
+       ("r-xvector" ,r-xvector)))
+    (home-page "http://bioconductor.org/packages/motifRG")
+    (synopsis "Discover motifs in high throughput sequencing data")
+    (description
+     "This package provides tools for discriminative motif discovery in high
+throughput genetic sequencing data sets using regression methods.")
+    (license license:artistic2.0)))
+
 (define-public r-qtl
  (package
   (name "r-qtl")