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author | Roel Janssen <roel@gnu.org> | 2020-09-10 16:38:43 +0200 |
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committer | Roel Janssen <roel@gnu.org> | 2020-09-10 16:38:43 +0200 |
commit | 66be746dc0c0f4ba3d748ed8d0983b2f9afdace8 (patch) | |
tree | 9ca34a49357a0cd5bc4a1ac65fe258a3d976631f /gnu/packages/cran.scm | |
parent | a5c151de0a7a75bf3803c51856f8c8c928361155 (diff) | |
download | guix-66be746dc0c0f4ba3d748ed8d0983b2f9afdace8.tar.gz |
gnu: Move r-bisquerna.
* gnu/packages/bioinformatics.scm (r-bisquerna): Move to ... * gnu/packages/cran.scm: ... here.
Diffstat (limited to 'gnu/packages/cran.scm')
-rw-r--r-- | gnu/packages/cran.scm | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8f7e379e42..27fae416f8 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -2183,6 +2183,31 @@ where the bound function accepts additional arguments.") bindings that call a C++ function.") (license license:expat))) +(define-public r-bisquerna + (package + (name "r-bisquerna") + (version "1.0.4") + (source (origin + (method url-fetch) + (uri (cran-uri "BisqueRNA" version)) + (sha256 + (base32 + "01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2")))) + (properties `((upstream-name . "BisqueRNA"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-limsolve" ,r-limsolve))) + (home-page "https://www.biorxiv.org/content/10.1101/669911v1") + (synopsis "Decomposition of bulk expression with single-cell sequencing") + (description "This package provides tools to accurately estimate cell type +abundances from heterogeneous bulk expression. A reference-based method +utilizes single-cell information to generate a signature matrix and +transformation of bulk expression for accurate regression based estimates. +A marker-based method utilizes known cell-specific marker genes to measure +relative abundances across samples.") + (license license:gpl3))) + (define-public r-auc (package (name "r-auc") |