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| author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-25 17:19:47 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-25 17:19:47 +0100 |
| commit | 3f6e6e98572e43297f8f780e0500a9c907c332c9 (patch) | |
| tree | 6e9d5539206ab3b6551ff672940e502e1b0b9cbf /gnu/packages/cran.scm | |
| parent | 4f8b1fb35fd768ee937dbb6bed9f0d4e27cdf435 (diff) | |
| download | guix-3f6e6e98572e43297f8f780e0500a9c907c332c9.tar.gz | |
gnu: Add r-rjava.
* gnu/packages/cran.scm (r-rjava): New variable.
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 68516ecf6f..d9648e4e9e 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -54,8 +54,10 @@ #:use-module (gnu packages graph) #:use-module (gnu packages gtk) #:use-module (gnu packages haskell) + #:use-module (gnu packages icu4c) #:use-module (gnu packages image) #:use-module (gnu packages imagemagick) + #:use-module (gnu packages java) #:use-module (gnu packages javascript) #:use-module (gnu packages lisp) #:use-module (gnu packages machine-learning) @@ -63,6 +65,7 @@ #:use-module (gnu packages mpi) #:use-module (gnu packages multiprecision) #:use-module (gnu packages networking) + #:use-module (gnu packages pcre) #:use-module (gnu packages perl) #:use-module (gnu packages pkg-config) #:use-module (gnu packages python) @@ -12871,3 +12874,50 @@ write HTML reports for statistical analysis. Finally, a driver for Sweave allows to parse HTML flat files containing R code and to automatically write the corresponding outputs (tables and graphs).") (license license:gpl2+))) + +(define-public r-rjava + (package + (name "r-rjava") + (version "0.9-10") + (source + (origin + (method url-fetch) + (uri (cran-uri "rJava" version)) + (sha256 + (base32 + "0y7yg70i3zwbwl4g36js4dqpl51cmwss5ymrsk24d1z07bflp4y9")))) + (properties `((upstream-name . "rJava"))) + (build-system r-build-system) + (arguments + `(#:modules ((guix build utils) + (guix build r-build-system) + (ice-9 match)) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-JAVA_HOME + (lambda* (#:key inputs #:allow-other-keys) + (let ((jdk (assoc-ref inputs "jdk"))) + (setenv "JAVA_HOME" jdk) + (setenv "JAVA" (which "java")) + (setenv "JAR" (which "jar")) + (setenv "JAVAC" (which "javac")) + (setenv "JAVAH" (which "javah")) + (setenv "JAVA_CPPFLAGS" + (string-append "-I" jdk "/include " + "-I" jdk "/include/linux")) + (match (find-files (string-append jdk "/jre/lib/") "libjvm.so") + ((lib) (setenv "JAVA_LIBS" lib)) + (_ (error "Could not find libjvm.so")))) + #t))))) + (inputs + `(("icu4c" ,icu4c) + ("jdk" ,icedtea-8 "jdk") + ("pcre" ,pcre) + ("zlib" ,zlib))) + (home-page "http://www.rforge.net/rJava/") + (synopsis "Low-Level R to Java interface") + (description + "This package provides a low-level interface to the Java VM very much +like .C/.Call and friends. It allows the creation of objects, calling methods +and accessing fields.") + (license license:gpl2))) |