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authorzimoun <zimon.toutoune@gmail.com>2020-09-11 20:08:44 +0200
committerRicardo Wurmus <rekado@elephly.net>2020-09-11 21:59:07 +0200
commit30aaee33066b9479cfc353f97f5f83f2e64517ef (patch)
tree8cc5abdb42e74a5f9490586ff6bbbc7117bb9d81 /gnu/packages/cran.scm
parent66a8e620705d98b6240670f7f5f9441462e8f621 (diff)
downloadguix-30aaee33066b9479cfc353f97f5f83f2e64517ef.tar.gz
gnu: r-seqminer: Move to (gnu packages cran).
* gnu/packages/bioinformatics.scm (r-seqminer): Move from here...
* gnu/packages/cran.scm (r-seqminer): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages/cran.scm')
-rw-r--r--gnu/packages/cran.scm22
1 files changed, 22 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 57b68c26ed..fec9947d0d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -24383,3 +24383,25 @@ Locus} (QTL) analysis in experimental crosses.  It is a reimplementation of the
 @code{R/qtl} package to better handle high-dimensional data and complex cross
 designs.  Broman et al. (2018) <doi:10.1534/genetics.118.301595>.")
     (license license:gpl3)))
+
+(define-public r-seqminer
+  (package
+    (name "r-seqminer")
+    (version "8.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "seqminer" version))
+       (sha256
+        (base32
+         "00jzj8mwb0zaiwlifd41b26mrq9mzigj18nc29dydi0r42hxg16i"))))
+    (build-system r-build-system)
+    (inputs
+     `(("zlib" ,zlib)))
+    (home-page "http://seqminer.genomic.codes")
+    (synopsis "Read nucleotide sequence data (VCF, BCF, and METAL formats)")
+    (description
+     "This package provides tools to integrate nucleotide sequencing
+data (variant call format, e.g. VCF or BCF) or meta-analysis results in R.")
+    ;; Any version of the GPL is acceptable
+    (license (list license:gpl2+ license:gpl3+))))