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authorzimoun <zimon.toutoune@gmail.com>2022-01-04 23:47:53 +0100
committerEfraim Flashner <efraim@flashner.co.il>2022-01-10 15:15:37 +0200
commit5d697044a84b03e83ea4716022453cf0d26f6b4a (patch)
tree32f6f12540a0672a8e6cfb72ad11ebd8466ae112 /gnu/packages/julia-xyz.scm
parent46472ae54546853b3bde1c4e7ed74ec641ca0476 (diff)
downloadguix-5d697044a84b03e83ea4716022453cf0d26f6b4a.tar.gz
gnu: Add julia-biosequences.
* gnu/packages/julia-xyz.scm (julia-biosequences): New variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
Diffstat (limited to 'gnu/packages/julia-xyz.scm')
-rw-r--r--gnu/packages/julia-xyz.scm31
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index f747c72a42..27daf975f1 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -387,6 +387,37 @@ many of the other BioJulia packages.  This package defines IO, exceptions, and
 other types or methods used by other BioJulia packages.")
       (license license:expat))))
 
+(define-public julia-biosequences
+  (package
+    (name "julia-biosequences")
+    (version "2.0.5")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/BioJulia/BioSequences.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0ns6zk0zvnsf4hlsys9ck2xrn20qck0b0aghh484vc6n458zq2gw"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     (list julia-biogenerics
+           julia-biosymbols
+           julia-combinatorics
+           julia-indexablebitvectors
+           julia-stablerngs
+           julia-twiddle))
+    (native-inputs
+     (list julia-statsbase
+           julia-yaml))
+    (home-page "https://biojulia.net/BioSequences.jl/stable/")
+    (synopsis "Data types and methods for common operations with biological sequences")
+    (description "This package provides Data types and methods for common
+operations with biological sequences, including DNA, RNA, and amino acid
+sequences.")
+    (license license:expat)))
+
 (define-public julia-biosymbols
   (package
     (name "julia-biosymbols")