Merge branch 'master' into core-updates

1 files changed, 177 insertions, 4 deletions

diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm
index f1da66a4be..34dba958ce 100644
--- a/gnu/packages/julia-xyz.scm
+++ b/gnu/packages/julia-xyz.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2020 Nicolò Balzarotti <nicolo@nixo.xyz>
+;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -22,19 +22,41 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system julia))
 
+(define-public julia-adapt
+  (package
+    (name "julia-adapt")
+    (version "3.1.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaGPU/Adapt.jl")
+             (commit (string-append "v" version))))
+       (file-name "Adapt")
+       (sha256
+        (base32 "1lks6k3a1gvwlplld47nh6xfy3nnlpc0vhkzg6zg0qn33qdmavrg"))))
+    (build-system julia-build-system)
+    (home-page "https://github.com/JuliaGPU/Adapt.jl")
+    (synopsis "Package providing the @code{adapt} function, similar to @code{convert}")
+    (description "This Julia package provides the @code{adapt(T, x)} function
+acts like @code{convert(T, x)}, but without the restriction of returning a
+@code{T}.  This allows you to \"convert\" wrapper types like @code{Adjoint} to
+be GPU compatible without throwing away the wrapper.")
+    (license license:expat)))
+
 (define-public julia-compat
   (package
     (name "julia-compat")
-    (version "3.9.1")
+    (version "3.25.0")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/JuliaLang/Compat.jl")
              (commit (string-append "v" version))))
-       (file-name "Compat")
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "01vwjr2134bzgnaxwd67knbibbhnfgnqjw7gxrp29s6y2a6j3882"))))
+        (base32 "1m4r5i8mq29xjp3mllh6047n5a78sdyld57m15anrnsjgaapcgby"))))
     (build-system julia-build-system)
     (home-page "https://github.com/JuliaLang/Compat.jl")
     (synopsis "Compatibility across Julia versions")
@@ -43,3 +65,154 @@ between older and newer versions of the Julia language.  The Compat package
 provides a macro that lets you use the latest syntax in a backwards-compatible
 way.")
     (license license:expat)))
+
+(define-public julia-datastructures
+  (package
+    (name "julia-datastructures")
+    (version "0.18.9")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaCollections/DataStructures.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l"))))
+    (propagated-inputs
+     `(("julia-compat" ,julia-compat)
+       ("julia-orderedcollections" ,julia-orderedcollections)))
+    (build-system julia-build-system)
+    (home-page "https://github.com/JuliaCollections/DataStructures.jl")
+    (synopsis "Julia module providing different data structures")
+    (description "This package implements a variety of data structures,
+including, @code{CircularBuffer}, @code{Queue}, @code{Stack},
+@code{Accumulators}, @code{LinkedLists}, @code{SortedDicts} and many others.")
+    (license license:expat)))
+
+(define-public julia-fixedpointnumbers
+  (package
+    (name "julia-fixedpointnumbers")
+    (version "0.8.4")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaMath/FixedPointNumbers.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0j0n40n04q9sk68wh9jq90m6c67k4ws02k41djjzkrqmpzv4rcdi"))))
+    (build-system julia-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'disable-failing-test
+           (lambda* (#:key outputs #:allow-other-keys)
+             (substitute* "test/fixed.jl"
+               ;; A deprecation warning is not thrown
+               (("@test_logs.*:warn" all) (string-append "# " all)))
+             #t)))))
+    (propagated-inputs `(("julia-compat" ,julia-compat)))
+    (home-page "https://github.com/JuliaMath/FixedPointNumbers.jl")
+    (synopsis "Fixed point types for Julia")
+    (description "@code{FixedPointNumbers.jl} implements fixed-point number
+types for Julia.  A fixed-point number represents a fractional, or
+non-integral, number.  In contrast with the more widely known floating-point
+numbers, with fixed-point numbers the decimal point doesn't \"float\":
+fixed-point numbers are effectively integers that are interpreted as being
+scaled by a constant factor.  Consequently, they have a fixed number of
+digits (bits) after the decimal (radix) point.")
+    (license license:expat)))
+
+(define-public julia-json
+  (package
+    (name "julia-json")
+    (version "0.21.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaIO/JSON.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     `(("julia-datastructures" ,julia-datastructures)
+       ("julia-fixedpointnumbers" ,julia-fixedpointnumbers)
+       ("julia-parsers" ,julia-parsers)
+       ("julia-offsetarrays" ,julia-offsetarrays)))
+    (home-page "https://github.com/JuliaIO/JSON.jl")
+    (synopsis "JSON parsing and printing library for Julia")
+    (description "@code{JSON.jl} is a pure Julia module which supports parsing
+and printing JSON documents.")
+    (license license:expat)))
+
+(define-public julia-orderedcollections
+  (package
+    (name "julia-orderedcollections")
+    (version "1.3.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaCollections/OrderedCollections.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0sfip1ixghsz91q2s7d62rgzw3gppg42fg6bccxlplqa3hfmbycf"))))
+    (build-system julia-build-system)
+    (home-page "https://github.com/JuliaCollections/OrderedCollections.jl")
+    (synopsis "Associative containers that preserve insertion order")
+    (description "This package implements @code{OrderedDicts} and
+@code{OrderedSets}, which are similar to containers in base Julia.  However,
+during iteration the @code{Ordered*} containers return items in the order in
+which they were added to the collection.")
+    (license license:expat)))
+
+(define-public julia-offsetarrays
+  (package
+    (name "julia-offsetarrays")
+    (version "1.5.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaArrays/OffsetArrays.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1y3fnssw2hzyghrk6jfcxslab0f8sjkjszh482snfq4k6mkrhy77"))))
+    (build-system julia-build-system)
+    (propagated-inputs
+     `(("julia-adapt" ,julia-adapt)))
+    ;; CatIndices depends on OffsetArrays, introducing a recursive dependency
+    (arguments '(#:tests? #f))
+    (home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/")
+    (synopsis "Fortran-like arrays with arbitrary, zero or negative indices")
+    (description "@code{OffsetArrays.jl} provides Julia users with arrays that
+have arbitrary indices, similar to those found in some other programming
+languages like Fortran.")
+    (license license:expat)))
+
+(define-public julia-parsers
+  (package
+    (name "julia-parsers")
+    (version "1.0.15")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/JuliaData/Parsers.jl")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "16iffl6l28kspgqch48mhi1s8qhspr3cpqcwsph3rqi72lbfqygx"))))
+    (build-system julia-build-system)
+    (home-page "https://github.com/JuliaData/Parsers.jl")
+    (synopsis "Fast parsing machinery for basic types in Julia")
+    (description "@code{Parsers.jl} is a collection of type parsers and
+utilities for Julia.")
+    (license license:expat)))