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| author | Eric Bavier <bavier@cray.com> | 2018-10-23 16:50:50 -0500 |
|---|---|---|
| committer | Eric Bavier <bavier@member.fsf.org> | 2019-01-25 13:09:47 -0600 |
| commit | a6b9ebc2fc92a72ca8a1e61e2d321804eec9d738 (patch) | |
| tree | dfdec51557ac0a4577d3f3e713856688b92873c4 /gnu/packages/maths.scm | |
| parent | 519be98c3536b5113cde368f9dc6db2e1ebe073e (diff) | |
| download | guix-a6b9ebc2fc92a72ca8a1e61e2d321804eec9d738.tar.gz | |
gnu: Add Combinatorial BLAS.
* gnu/packages/maths.scm (combinatorial-blas): New variable. * gnu/packages/patches/combinatorial-blas-awpm.patch, gnu/packages/patches/combinatorial-blas-io-fix.patch: New files * gnu/local.mk(dist_patch_DATA): Add them.
Diffstat (limited to 'gnu/packages/maths.scm')
| -rw-r--r-- | gnu/packages/maths.scm | 51 |
1 files changed, 51 insertions, 0 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 2f52b4a0ff..b53fa7fad1 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -48,6 +48,7 @@ (define-module (gnu packages maths) #:use-module (ice-9 regex) + #:use-module (ice-9 match) #:use-module (gnu packages) #:use-module ((guix licenses) #:prefix license:) #:use-module (guix packages) @@ -4215,3 +4216,53 @@ easily be incorporated into existing simulation codes.") (add-before 'check 'mpi-setup ,%openmpi-setup))))) (synopsis "SUNDIALS with OpenMPI support"))) + +(define-public combinatorial-blas + (package + (name "combinatorial-blas") + (version "1.6.2") + (source + (origin + (method url-fetch) + (uri (string-append "http://eecs.berkeley.edu/~aydin/CombBLAS_FILES/" + "CombBLAS_beta_" + (match (string-split version #\.) + ((major minor patch) + (string-append major minor "_" patch))) ;e.g. "16_2" + ".tgz")) + (sha256 + (base32 + "1a9wbgdqyy1whhfc0yl0yqkax3amnqa6iihhq48d063gc0jwfd9a")) + (patches (search-patches "combinatorial-blas-awpm.patch" + "combinatorial-blas-io-fix.patch")))) + (build-system cmake-build-system) + (inputs + `(("mpi" ,openmpi) + ("test-data" ,(origin + (method url-fetch) + (uri (string-append "https://people.eecs.berkeley.edu/~aydin/" + "CombBLAS_FILES/testdata_combblas1.6.1.tgz")) + (sha256 + (base32 + "01y2781cy3fww7znmidrp85mf8zx0c905w5vzvk1mgrmhhynim87")))))) + (arguments + `(#:configure-flags '("-DBUILD_SHARED_LIBS:BOOL=YES" + "-DCMAKE_CXX_FLAGS=-DUSE_FUNNEL") + #:parallel-tests? #f ;tests use 'mpiexec -n4' + #:phases + (modify-phases %standard-phases + (add-before 'check 'mpi-setup + ,%openmpi-setup) + (add-before 'check 'test-setup + (lambda* (#:key inputs #:allow-other-keys) + (setenv "OMP_NUM_THREADS" "2") + (invoke "tar" "xf" (assoc-ref inputs "test-data"))))))) + (home-page "https://people.eecs.berkeley.edu/~aydin/CombBLAS/html/") + (synopsis "Linear algebra primitives for graph analytics") + (description "The Combinatorial BLAS (CombBLAS) is an extensible +distributed-memory parallel graph library offering a small but powerful set of +linear algebra primitives specifically targeting graph analytics.") + (license (list + license:gpl2+ ;include/psort/(funnel|sort)*.h + license:x11 ;usort and psort + license:bsd-3)))) ;CombBLAS and MersenneTwister.h |