Merge remote-tracking branch 'origin/master' into staging

1 files changed, 6 insertions, 94 deletions

diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index c6cecb703c..395acea2cc 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -12,14 +12,14 @@
 ;;; Copyright © 2015 Fabian Harfert <fhmgufs@web.de>
 ;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2016, 2018 Kei Kebreau <kkebreau@posteo.net>
-;;; Copyright © 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be>
 ;;; Copyright © 2017, 2018 Paul Garlick <pgarlick@tourbillion-technology.com>
 ;;; Copyright © 2017 Nils Gillmann <ng0@n0.is>
 ;;; Copyright © 2017 Ben Woodcroft <donttrustben@gmail.com>
 ;;; Copyright © 2017 Theodoros Foradis <theodoros@foradis.org>
-;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2017, 2019 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017 Dave Love <me@fx@gnu.org>
 ;;; Copyright © 2018 Jan Nieuwenhuizen <janneke@gnu.org>
@@ -57,7 +57,6 @@
   #:use-module ((guix build utils) #:select (alist-replace))
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
-  #:use-module (guix build-system ocaml)
   #:use-module (guix build-system python)
   #:use-module (guix build-system r)
   #:use-module (guix build-system ruby)
@@ -99,7 +98,6 @@
   #:use-module (gnu packages mpi)
   #:use-module (gnu packages multiprecision)
   #:use-module (gnu packages netpbm)
-  #:use-module (gnu packages ocaml)
   #:use-module (gnu packages pcre)
   #:use-module (gnu packages popt)
   #:use-module (gnu packages perl)
@@ -398,33 +396,6 @@ differential equations, linear algebra, Fast Fourier Transforms and random
 numbers.")
     (license license:gpl3+)))
 
-(define-public ocaml-gsl
-  (package
-    (name "ocaml-gsl")
-    (version "1.22.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri
-        (string-append
-         "https://github.com/mmottl/gsl-ocaml/releases/download/"
-         version "/gsl-" version ".tbz"))
-       (sha256
-        (base32
-         "17vcswipliq1b2idbzx1z95kskn1a4q4s5v04igilg0f7lnkaarb"))))
-    (build-system ocaml-build-system)
-    (inputs
-     `(("gsl" ,gsl)))
-    (home-page "https://mmottl.github.io/gsl-ocaml")
-    (synopsis "Bindings to the GNU Scientific Library")
-    (description
-     "GSL-OCaml is an interface to the @dfn{GNU scientific library} (GSL) for
-the OCaml language.")
-    (license license:gpl3+)))
-
-(define-public ocaml4.01-gsl
-  (package-with-ocaml4.01 ocaml-gsl))
-
 (define-public glpk
   (package
     (name "glpk")
@@ -1484,11 +1455,10 @@ can solve two kinds of problems:
        (modify-phases %standard-phases
          (add-after 'configure 'configure-makeinfo
            (lambda* (#:key inputs #:allow-other-keys)
-             (substitute* "libinterp/corefcn/help.cc"
-               (("Vmakeinfo_program = \"makeinfo\"")
-                (string-append "Vmakeinfo_program = \""
-                               (assoc-ref inputs "texinfo")
-                               "/bin/makeinfo\"")))
+             (substitute* "libinterp/corefcn/help.h"
+               (("\"makeinfo\"")
+                (string-append
+                 "\"" (assoc-ref inputs "texinfo") "/bin/makeinfo\"")))
              #t)))))
     (home-page "https://www.gnu.org/software/octave/")
     (synopsis "High-level language for numerical computation")
@@ -4019,64 +3989,6 @@ as equations, scalars, vectors, and matrices.")
 theories} (SMT) solver.  It provides a C/C++ API, as well as Python bindings.")
     (license license:expat)))
 
-(define-public cubicle
-  (package
-    (name "cubicle")
-    (version "1.1.2")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "http://cubicle.lri.fr/cubicle-"
-                                  version ".tar.gz"))
-              (sha256
-               (base32
-                "10kk80jdmpdvql88sdjsh7vqzlpaphd8vip2lp47aarxjkwjlz1q"))))
-    (build-system gnu-build-system)
-    (native-inputs
-     `(("automake" ,automake)
-       ("ocaml" ,ocaml)
-       ("which" ,(@@ (gnu packages base) which))))
-    (propagated-inputs
-     `(("ocaml-num" ,ocaml-num)
-       ("z3" ,z3)))
-    (arguments
-     `(#:configure-flags (list "--with-z3")
-       #:make-flags (list "QUIET=")
-       #:tests? #f
-       #:phases
-       (modify-phases %standard-phases
-         (add-before 'configure 'configure-for-release
-           (lambda _
-             (substitute* "Makefile.in"
-               (("SVNREV=") "#SVNREV="))
-             #t))
-         (add-before 'configure 'fix-/bin/sh
-           (lambda _
-             (substitute* "configure"
-               (("-/bin/sh") (string-append "-" (which "sh"))))
-             #t))
-         (add-before 'configure 'fix-smt-z3wrapper.ml
-           (lambda _
-             (substitute* "Makefile.in"
-               (("\\\\n") ""))
-             #t))
-         (add-before 'configure 'fix-ocaml-num
-           (lambda* (#:key inputs #:allow-other-keys)
-             (substitute* "Makefile.in"
-               (("= \\$\\(FUNCTORYLIB\\)")
-                (string-append "= -I "
-                               (assoc-ref inputs "ocaml-num")
-                               "/lib/ocaml/site-lib"
-                               " $(FUNCTORYLIB)")))
-             #t)))))
-    (home-page "http://cubicle.lri.fr/")
-    (synopsis "Model checker for array-based systems")
-    (description "Cubicle is a model checker for verifying safety properties
-of array-based systems.  This is a syntactically restricted class of
-parametrized transition systems with states represented as arrays indexed by
-an arbitrary number of processes.  Cache coherence protocols and mutual
-exclusion algorithms are typical examples of such systems.")
-    (license license:asl2.0)))
-
 (define-public elemental
   (package
     (name "elemental")